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对从韩国西南部居民隐形眼镜储存盒中分离出的棘阿米巴进行线粒体DNA限制性片段长度多态性(RFLP)和18S小亚基核糖体DNA PCR-RFLP分析。

Mitochondrial DNA restriction fragment length polymorphism (RFLP) and 18S small-subunit ribosomal DNA PCR-RFLP analyses of Acanthamoeba isolated from contact lens storage cases of residents in southwestern Korea.

作者信息

Kong Hyun-Hee, Shin Ji-Yeol, Yu Hak-Sun, Kim Jin, Hahn Tae-Won, Hahn Young-Ho, Chung Dong-Il

机构信息

Department of Parasitology, Kyungpook National University School of Medicine, Taegu, Korea.

出版信息

J Clin Microbiol. 2002 Apr;40(4):1199-206. doi: 10.1128/JCM.40.4.1199-1206.2002.

DOI:10.1128/JCM.40.4.1199-1206.2002
PMID:11923331
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC140361/
Abstract

We applied ribosomal DNA PCR-restriction fragment length polymorphism (RFLP) and mitochondrial DNA (mtDNA) RFLP analyses to 43 Acanthamoeba environmental isolates (KA/LH1 to KA/LH43) from contact lens storage cases in southwestern Korea. These isolates were compared to American Type Culture Collection strains and clinical isolates (KA/E1 to KA/E12) from patients with keratitis. Seven riboprint patterns were seen. To identify the species of the isolates, a phylogenetic tree was constructed based on the comparison of riboprint patterns with reference strains. Four types accounted for 39 of the isolates belonging to the A. castellanii complex. The most predominant (48.8%) type was A. castellanii KA/LH2 type, which had identical riboprint and mtDNA RFLP patterns to those of A. castellanii Castellani, KA/E3 and KA/E8. The riboprint and mtDNA RFLP patterns of the KA/LH7 (20.9%) type were identical to those of A. castellanii Ma, a corneal isolate from the United States. The riboprint and mtDNA RFLP patterns of the KA/LH1 (18.6%) type were the same as those of A. lugdunensis L3a, KA/E2, and KA/E12. The prevalent pattern for each type of Acanthamoeba in southwestern Korea was very different from that from southeastern Korea and Seoul, Korea. It is noteworthy that 38 (88.4%) out of 43 isolates from contact lens storage cases of the residents in southwestern Korea revealed mtDNA RFLP and riboprint patterns identical to those found for clinical isolates in our area. This indicates that most isolates from contact lens storage cases in the surveyed area are potential keratopathogens. More attention should be paid to the disinfection of contact lens storage cases to prevent possible amoebic keratitis.

摘要

我们对来自韩国西南部隐形眼镜储存盒的43株棘阿米巴环境分离株(KA/LH1至KA/LH43)进行了核糖体DNA聚合酶链反应-限制性片段长度多态性(RFLP)分析和线粒体DNA(mtDNA)RFLP分析。将这些分离株与美国模式培养物保藏库菌株以及来自角膜炎患者的临床分离株(KA/E1至KA/E12)进行比较。观察到七种核糖体指纹图谱模式。为了鉴定分离株的种类,基于核糖体指纹图谱模式与参考菌株的比较构建了系统发育树。四种类型占属于卡氏棘阿米巴复合体的39株分离株。最主要的(48.8%)类型是卡氏棘阿米巴KA/LH2型,其核糖体指纹图谱和mtDNA RFLP模式与卡氏棘阿米巴Castellani、KA/E3和KA/E8的相同。KA/LH7(20.9%)型的核糖体指纹图谱和mtDNA RFLP模式与来自美国的角膜分离株卡氏棘阿米巴Ma的相同。KA/LH1(18.6%)型的核糖体指纹图谱和mtDNA RFLP模式与鲁氏棘阿米巴L3a、KA/E2和KA/E12的相同。韩国西南部每种棘阿米巴的流行模式与韩国东南部和首尔的非常不同。值得注意的是,来自韩国西南部居民隐形眼镜储存盒的43株分离株中有38株(88.4%)的mtDNA RFLP和核糖体指纹图谱模式与我们地区临床分离株的相同。这表明调查区域隐形眼镜储存盒中的大多数分离株是潜在的角膜病原体。应更加重视隐形眼镜储存盒的消毒,以预防可能的阿米巴性角膜炎。

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Subgenus classification of Acanthamoeba by riboprinting.通过核糖体印记法对棘阿米巴属进行亚属分类。
Korean J Parasitol. 1998 Jun;36(2):69-80. doi: 10.3347/kjp.1998.36.2.69.
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Species identification and molecular characterization of Acanthamoeba isolated from contact lens paraphernalia.从隐形眼镜相关用品中分离出的棘阿米巴的物种鉴定及分子特征分析。
Korean J Ophthalmol. 1997 Jun;11(1):39-50. doi: 10.3341/kjo.1997.11.1.39.
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Subgenus systematics of Acanthamoeba: four nuclear 18S rDNA sequence types.棘阿米巴属的亚属分类学:四种核18S核糖体DNA序列类型。
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PCR and RFLP variation of conserved region of small subunit ribosomal DNA among Acanthamoeba isolates assigned to either A. castellanii or A. polyphaga.分配为卡氏棘阿米巴或多食棘阿米巴的棘阿米巴分离株中小亚基核糖体DNA保守区域的PCR和RFLP变异
Korean J Parasitol. 1996 Jun;34(2):127-34. doi: 10.3347/kjp.1996.34.2.127.