• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect.

作者信息

Achterhold K, Keppler C, Ostermann A, van Bürck U, Sturhahn W, Alp E E, Parak F G

机构信息

Physik-Department E17, Technische Universität München, 85747 Garching, Germany.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 May;65(5 Pt 1):051916. doi: 10.1103/PhysRevE.65.051916. Epub 2002 May 17.

DOI:10.1103/PhysRevE.65.051916
PMID:12059602
Abstract

The phonon-assisted Mössbauer effect is used to determine the partial phonon density of states of the iron within the active center of deoxymyoglobin, carboxymyoglobin, and dry and wet metmyoglobin between 40 and 300 K. Between 0 and 1 meV the iron density of states increases quadratically with the energy, as in a Debye solid. Mean sound velocities are extracted from this slope. Between 1 and 3 meV a nearly quadratic "Debye-like" increase follows due to the similar strength of intermolecular and intramolecular forces. Above 3 meV, optical vibrations are characteristic for the iron-ligand conformation. The overall mean square displacements of the heme iron atom obtained from the density of states agree well with the values of Mössbauer absorption experiments below 180 K. In the physiological temperature regime the data confirm the existence of harmonic vibrations in addition to the protein specific dynamics measured by Mössbauer absorption. In the Debye energy regime the mean square displacement of the iron is in agreement with that of the hydrogens measured by incoherent neutron scattering demonstrating the global character of these modes. At higher energies the vibration of the heavy iron atom at 33 meV in metmyoglobin is as large as that of the lightweight hydrogens at that energy. A freeze dried, rehydrated (h=0.38 g H2O/g protein) metmyoglobin sample shows an excess of states above the Debye law between 1 and 3 meV, similar to neutron scattering experiments. The room temperature density of states below 3 meV exhibit an increase of the density compared to the low temperature data, which can be interpreted as mode softening.

摘要

相似文献

1
Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect.
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 May;65(5 Pt 1):051916. doi: 10.1103/PhysRevE.65.051916. Epub 2002 May 17.
2
Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy.通过正常模式、穆斯堡尔谱、拉曼光谱和吸收光谱研究肌红蛋白的结构波动
Biophys J. 1996 May;70(5):2092-9. doi: 10.1016/S0006-3495(96)79775-8.
3
Conformational substates in a protein: structure and dynamics of metmyoglobin at 80 K.蛋白质中的构象亚态:80K 下高铁肌红蛋白的结构与动力学
Proc Natl Acad Sci U S A. 1982 Aug;79(16):4967-71. doi: 10.1073/pnas.79.16.4967.
4
Dynamical transition of myoglobin revealed by inelastic neutron scattering.非弹性中子散射揭示的肌红蛋白的动力学转变
Nature. 1989 Feb 23;337(6209):754-6. doi: 10.1038/337754a0.
5
The X-ray absorption spectroscopy Debye-Waller factors of an iron compound and of met-myoglobin as a function of temperature.一种铁化合物和高铁肌红蛋白的X射线吸收光谱德拜-瓦勒因子随温度的变化情况。
Eur Biophys J. 2001 Oct;30(6):393-403. doi: 10.1007/s002490100153.
6
A water network within a protein: temperature-dependent water ligation in H64V-metmyoglobin and relaxation to deoxymyoglobin.蛋白质内部的水网络:H64V-高铁肌红蛋白中温度依赖性的水连接及向脱氧肌红蛋白的弛豫
Eur Biophys J. 2003 Feb;31(8):595-607. doi: 10.1007/s00249-002-0255-x. Epub 2002 Nov 1.
7
Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering.肌红蛋白低频动力学的温度依赖性。通过非弹性中子散射测量振动频率分布。
Biophys J. 1990 Jul;58(1):243-51. doi: 10.1016/S0006-3495(90)82369-9.
8
Fe vibrational spectroscopy of myoglobin and cytochrome f.肌红蛋白和细胞色素f的铁振动光谱
J Phys Chem B. 2006 Jan 12;110(1):530-6. doi: 10.1021/jp053440r.
9
Proton vibrational dynamics in lithium imide investigated through incoherent inelastic and Compton neutron scattering.通过非弹性和康普顿中子散射研究了亚胺锂中的质子振动动力学。
J Chem Phys. 2012 Nov 28;137(20):204309. doi: 10.1063/1.4767566.
10
Nuclear forward scattering of synchrotron radiation by deoxymyoglobin.脱氧肌红蛋白对同步辐射的核前向散射
Eur Biophys J. 2000;29(2):146-52. doi: 10.1007/s002490050260.

引用本文的文献

1
Temperature-dependent iron motion in extremophile rubredoxins - no need for 'corresponding states'.温度依赖的极端微生物 rubredoxins 中的铁运动——无需“对应状态”。
Sci Rep. 2024 May 28;14(1):12197. doi: 10.1038/s41598-024-62261-2.
2
Protein and RNA dynamical fingerprinting.蛋白质和 RNA 动力学指纹图谱分析。
Nat Commun. 2019 Mar 4;10(1):1026. doi: 10.1038/s41467-019-08926-3.
3
What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.从核共振振动光谱学中可以学到什么:振动动力学与血红素
Chem Rev. 2017 Oct 11;117(19):12532-12563. doi: 10.1021/acs.chemrev.7b00295. Epub 2017 Sep 18.
4
Terahertz optical measurements of correlated motions with possible allosteric function.具有可能变构功能的相关运动的太赫兹光学测量。
Biophys Rev. 2015 Jun;7(2):201-216. doi: 10.1007/s12551-015-0168-4. Epub 2015 Apr 7.
5
Moving in the Right Direction: Protein Vibrations Steering Function.朝着正确方向前进:蛋白质振动引导功能
Biophys J. 2017 Mar 14;112(5):933-942. doi: 10.1016/j.bpj.2016.12.049.
6
Recent advances in biosynthetic modeling of nitric oxide reductases and insights gained from nuclear resonance vibrational and other spectroscopic studies.一氧化氮还原酶生物合成模型的最新进展以及从核共振振动和其他光谱研究中获得的见解。
Inorg Chem. 2015 Oct 5;54(19):9317-29. doi: 10.1021/acs.inorgchem.5b01105. Epub 2015 Aug 14.
7
A wave-mechanical model of incoherent quasielastic scattering in complex systems.复杂系统中非相干准弹性散射的波动力学模型。
Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12764-8. doi: 10.1073/pnas.1411781111. Epub 2014 Aug 18.
8
Predicting Nuclear Resonance Vibrational Spectra of [Fe(OEP)(NO)].预测[Fe(OEP)(NO)]的核磁共振振动光谱。
J Chem Theory Comput. 2012 Jan 10;8(1):214-223. doi: 10.1021/ct2006456. Epub 2011 Nov 29.
9
Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.五配位咪唑配体铁(II)卟啉的核共振振动光谱。
Inorg Chem. 2012 Feb 6;51(3):1359-70. doi: 10.1021/ic201580v. Epub 2012 Jan 13.
10
Evidence of protein collective motions on the picosecond timescale.证据表明蛋白质在皮秒时间尺度上的集体运动。
Biophys J. 2011 Feb 16;100(4):1058-65. doi: 10.1016/j.bpj.2010.12.3731.