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蛋白质和 RNA 动力学指纹图谱分析。

Protein and RNA dynamical fingerprinting.

机构信息

Department of Physics, University at Buffalo, SUNY, Buffalo, NY, USA.

National Heart, Lung and Blood Institute, Bethesda, MD, USA.

出版信息

Nat Commun. 2019 Mar 4;10(1):1026. doi: 10.1038/s41467-019-08926-3.

Abstract

Protein structural vibrations impact biology by steering the structure to functional intermediate states; enhancing tunneling events; and optimizing energy transfer. Strong water absorption and a broad continuous vibrational density of states have prevented optical identification of these vibrations. Recently spectroscopic signatures that change with functional state were measured using anisotropic terahertz microscopy. The technique however has complex sample positioning requirements and long measurement times, limiting access for the biomolecular community. Here we demonstrate that a simplified system increases spectroscopic structure to dynamically fingerprint biomacromolecules with a factor of 6 reduction in data acquisition time. Using this technique, polarization varying anisotropy terahertz microscopy, we show sensitivity to inhibitor binding and unique vibrational spectra for several proteins and an RNA G-quadruplex. The technique's sensitivity to anisotropic absorbance and birefringence provides rapid assessment of macromolecular dynamics that impact biology.

摘要

蛋白质结构振动通过将结构导向功能中间状态、增强隧穿事件以及优化能量转移来影响生物学。强烈的水吸收和广泛的连续振动态密度防止了这些振动的光学识别。最近,使用各向异性太赫兹显微镜测量了与功能状态变化相关的光谱特征。然而,该技术具有复杂的样品定位要求和较长的测量时间,限制了生物分子界的使用。在这里,我们证明了一个简化的系统可以通过将数据采集时间减少 6 倍,来增加光谱结构以动态地对生物大分子进行指纹识别。使用这项技术,即偏振变化各向异性太赫兹显微镜,我们展示了对几种蛋白质和 RNA G-四链体的抑制剂结合的敏感性以及独特的振动光谱。该技术对各向异性吸收率和双折射的敏感性提供了对影响生物学的大分子动力学的快速评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d13/6399446/30222c16725a/41467_2019_8926_Fig1_HTML.jpg

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