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樟脑羟基化过程中细胞色素P450的活性物种是什么?化合物I以及还原态和氧化态铁氧中间体不同电子态的量子力学/分子力学研究。

What is the active species of cytochrome P450 during camphor hydroxylation? QM/MM studies of different electronic states of compound I and of reduced and oxidized iron-oxo intermediates.

作者信息

Altun Ahmet, Shaik Sason, Thiel Walter

机构信息

Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany.

出版信息

J Am Chem Soc. 2007 Jul 25;129(29):8978-87. doi: 10.1021/ja066847y. Epub 2007 Jun 27.

DOI:10.1021/ja066847y
PMID:17595079
Abstract

We have investigated C-H hydroxylation of camphor by Compound I (Cpd I) of cytochrome P450cam in different electronic states and by its one-electron reduced and oxidized forms, using QM/MM calculations in the native protein/solvent environment. Cpd I species with five unpaired electrons (pentaradicaloids) are ca. 12 kcal/mol higher in energy than the ground state Cpd I species with three unpaired electrons (triradicaloids). The H-abstraction transition states of pentaradicaloids lie ca. 21 (9) kcal/mol above the triradicaloid (pentaradicaloid) reactants. Hydroxylation via pentaradicaloids is thus facile provided that they can react before relaxing to the ground-state triradicaloids. Excited states of Cpd I with an Fe(V)-oxo moiety lie more than 20 kcal/mol above the triradicaloid ground state in single-point gas-phase calculations, but these electronic configurations are not stable upon including the point-charge protein environment which causes SCF convergence to the triradicaloid ground state. One-electron reduced species (Cpd II) show sluggish reactivity compared with Cpd I in agreement with experimental model studies. One-electron oxidized species are more reactive than Cpd I but seem too high in energy to be accessible. The barriers to hydrogen abstraction for the various forms of Cpd I are generally not affected much by the chosen protonation states of the Asp297 and His355 residues near the propionate side chains of the heme or by the appearance of radical character at Asp297, His355, or the propionates.

摘要

我们使用QM/MM计算方法,在天然蛋白质/溶剂环境中,研究了细胞色素P450cam的化合物I(Cpd I)处于不同电子态时及其单电子还原态和氧化态对樟脑的C-H羟基化反应。具有五个未成对电子的Cpd I物种(五自由基类)的能量比具有三个未成对电子的基态Cpd I物种(三自由基类)高约12 kcal/mol。五自由基类的氢提取过渡态比三自由基类(五自由基类)反应物高约21(9)kcal/mol。因此,只要五自由基类能够在弛豫到基态三自由基类之前发生反应,通过它们进行的羟基化反应就很容易进行。在单点气相计算中,具有Fe(V)-氧代部分的Cpd I激发态比三自由基类基态高出20 kcal/mol以上,但在包含点电荷蛋白质环境时,这些电子构型不稳定,会导致自洽场收敛到三自由基类基态。与Cpd I相比,单电子还原物种(Cpd II)的反应活性较低,这与实验模型研究结果一致。单电子氧化物种比Cpd I更具反应活性,但能量似乎过高而难以达到。各种形式的Cpd I的氢提取势垒通常不受血红素丙酸侧链附近的Asp297和His355残基的选定质子化状态的影响,也不受Asp297、His355或丙酸酯上自由基特征出现的影响。

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