用于比较基因发现和比对的SLAM网络服务器。
SLAM web server for comparative gene finding and alignment.
作者信息
Cawley Simon, Pachter Lior, Alexandersson Marina
机构信息
Affymetrix Inc., 6550 Vallejo St, Suite 100, Emeryville, CA 94608, USA.
出版信息
Nucleic Acids Res. 2003 Jul 1;31(13):3507-9. doi: 10.1093/nar/gkg583.
Abstract
SLAM is a program that simultaneously aligns and annotates pairs of homologous sequences. The SLAM web server integrates SLAM with repeat masking tools and the AVID alignment program to allow for rapid alignment and gene prediction in user submitted sequences. Along with annotations and alignments for the submitted sequences, users obtain a list of predicted conserved non-coding sequences (and their associated alignments). The web site also links to whole genome annotations of the human, mouse and rat genomes produced with the SLAM program. The server can be accessed at http://bio.math.berkeley.edu/slam.
摘要
SLAM是一个能同时比对和注释同源序列对的程序。SLAM网络服务器将SLAM与重复序列屏蔽工具及AVID比对程序整合在一起，以便在用户提交的序列中进行快速比对和基因预测。除了提交序列的注释和比对结果外，用户还能获得预测的保守非编码序列列表（及其相关比对结果）。该网站还链接到使用SLAM程序生成的人类、小鼠和大鼠基因组的全基因组注释。可通过http://bio.math.berkeley.edu/slam访问该服务器。
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本文引用的文献
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