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MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences.
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2
ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.
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3
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
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Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans.
Bioinformatics. 2006 Mar 15;22(6):692-8. doi: 10.1093/bioinformatics/bti795. Epub 2005 Nov 24.
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GMAP: a genomic mapping and alignment program for mRNA and EST sequences.
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6
MultiPipMaker: comparative alignment server for multiple DNA sequences.
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7
SLAM web server for comparative gene finding and alignment.
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Using BLAT to find sequence similarity in closely related genomes.
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9
FELINES: a utility for extracting and examining EST-defined introns and exons.
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10
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
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引用本文的文献

2
Origin and Evolution of the Sponge Aggregation Factor Gene Family.
Mol Biol Evol. 2017 May 1;34(5):1083-1099. doi: 10.1093/molbev/msx058.
4
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.
PLoS One. 2013 Jul 29;8(7):e69890. doi: 10.1371/journal.pone.0069890. Print 2013.
5
Functional characterization and localization of Pneumocystis carinii lanosterol synthase.
Eukaryot Cell. 2010 Jan;9(1):107-15. doi: 10.1128/EC.00264-09. Epub 2009 Nov 6.
6
WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W77-83. doi: 10.1093/nar/gkp389. Epub 2009 May 22.
7
Sim4cc: a cross-species spliced alignment program.
Nucleic Acids Res. 2009 Jun;37(11):e80. doi: 10.1093/nar/gkp319. Epub 2009 May 8.
8
Contrasting evolution of diversity at two disease-associated chicken genes.
Immunogenetics. 2009 Apr;61(4):303-14. doi: 10.1007/s00251-009-0359-x. Epub 2009 Feb 27.
10
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W301-4. doi: 10.1093/nar/gkh478.

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The genome sequence of the malaria mosquito Anopheles gambiae.
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Alternative pre-mRNA splicing and proteome expansion in metazoans.
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The genome sequence of Schizosaccharomyces pombe.
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The PROSITE database, its status in 2002.
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