• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

咖啡因和绿原酸对碘化丙啶与DNA结合能力的影响:对咖啡树基因组大小评估的影响

Effects of caffeine and chlorogenic acid on propidium iodide accessibility to DNA: consequences on genome size evaluation in coffee tree.

作者信息

Noirot M, Barre P, Duperray C, Louarn J, Hamon S

机构信息

IRD BP5045, 34032 Montpellier Cedex, France.

出版信息

Ann Bot. 2003 Aug;92(2):259-64. doi: 10.1093/aob/mcg139.

DOI:10.1093/aob/mcg139
PMID:12876189
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4243661/
Abstract

Estimates of genome size using flow cytometry can be biased by the presence of cytosolic compounds, leading to pseudo-intraspecific variation in genome size. Two important compounds present in coffee trees-caffeine and chlorogenic acid-modify accessibility of the dye propidium iodide to Petunia DNA, a species used as internal standard in our genome size evaluation. These compounds could be responsible for intraspecific variation in genome size since their contents vary between trees. They could also be implicated in environmental variations in genome size, such as those revealed when comparing the results of evaluations carried out on different dates on several genotypes.

摘要

使用流式细胞术估计基因组大小可能会因胞质化合物的存在而产生偏差,从而导致基因组大小出现假种内变异。咖啡树中存在的两种重要化合物——咖啡因和绿原酸——会改变碘化丙啶染料对矮牵牛DNA的可及性,矮牵牛DNA是我们在基因组大小评估中用作内标的物种。由于这些化合物在不同树木间的含量不同,它们可能是造成基因组大小种内变异的原因。它们也可能与基因组大小的环境变异有关,比如在比较不同日期对几种基因型进行评估的结果时所揭示的变异。

相似文献

1
Effects of caffeine and chlorogenic acid on propidium iodide accessibility to DNA: consequences on genome size evaluation in coffee tree.咖啡因和绿原酸对碘化丙啶与DNA结合能力的影响:对咖啡树基因组大小评估的影响
Ann Bot. 2003 Aug;92(2):259-64. doi: 10.1093/aob/mcg139.
2
Consequences of stoichiometric error on nuclear DNA content evaluation in Coffea liberica var. dewevrei using DAPI and propidium iodide.化学计量误差对利用DAPI和碘化丙啶评估利比里亚咖啡变种德氏咖啡核DNA含量的影响。
Ann Bot. 2002 Apr;89(4):385-9. doi: 10.1093/aob/mcf056.
3
Investigation on the causes of stoichiometric error in genome size estimation using heat experiments: consequences on data interpretation.利用热实验估计基因组大小的化学计量误差原因调查:对数据解释的影响
Ann Bot. 2005 Jan;95(1):111-8. doi: 10.1093/aob/mci006.
4
Reliable flow cytometric estimation of nuclear DNA content in coffee trees.咖啡树细胞核DNA含量的可靠流式细胞术估计
Cytometry. 1996 May 1;24(1):32-8. doi: 10.1002/(SICI)1097-0320(19960501)24:1<32::AID-CYTO4>3.0.CO;2-K.
5
Flow cytometric analysis using SYBR Green I for genome size estimation in coffee.使用 SYBR Green I 的流式细胞术分析用于咖啡基因组大小估计。
Acta Histochem. 2011 Feb;113(2):221-5. doi: 10.1016/j.acthis.2009.10.005. Epub 2010 Feb 10.
6
Are seeds suitable for flow cytometric estimation of plant genome size?种子是否适合用于植物基因组大小的流式细胞术估计?
Cytometry A. 2005 Apr;64(2):72-9. doi: 10.1002/cyto.a.20122.
7
Anthocyanin inhibits propidium iodide DNA fluorescence in Euphorbia pulcherrima: implications for genome size variation and flow cytometry.花青素抑制一品红中碘化丙啶DNA荧光:对基因组大小变异和流式细胞术的影响
Ann Bot. 2008 Apr;101(6):777-90. doi: 10.1093/aob/mcm303. Epub 2007 Dec 23.
8
Measuring Cell Death by Propidium Iodide Uptake and Flow Cytometry.通过碘化丙啶摄取和流式细胞术检测细胞死亡
Cold Spring Harb Protoc. 2016 Jul 1;2016(7):2016/7/pdb.prot087163. doi: 10.1101/pdb.prot087163.
9
Measuring the DNA Content of Cells in Apoptosis and at Different Cell-Cycle Stages by Propidium Iodide Staining and Flow Cytometry.通过碘化丙啶染色和流式细胞术测量凋亡细胞及不同细胞周期阶段细胞的DNA含量
Cold Spring Harb Protoc. 2016 Oct 3;2016(10):2016/10/pdb.prot087247. doi: 10.1101/pdb.prot087247.
10
Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content.利用咖啡(阿拉比卡咖啡)的草图基因组鉴定与咖啡因含量相关的 SNPs。
Plant Biotechnol J. 2018 Oct;16(10):1756-1766. doi: 10.1111/pbi.12912. Epub 2018 Apr 13.

引用本文的文献

1
May DNA analyses be biased by hidden oxidative damage? Voltammetric study of temperature and oxidation stress effect.DNA 分析是否会受到隐藏的氧化损伤的影响?温度和氧化应激效应的伏安法研究。
PLoS One. 2024 Jun 14;19(6):e0305590. doi: 10.1371/journal.pone.0305590. eCollection 2024.
2
A Novel Sorbitol-Based Flow Cytometry Buffer Is Effective for Genome Size Estimation across a Cypriot Grapevine Collection.一种新型基于山梨醇的流式细胞术缓冲液对塞浦路斯葡萄品种收集物的基因组大小估计有效。
Plants (Basel). 2024 Mar 5;13(5):733. doi: 10.3390/plants13050733.
3
Genome size variation and evolution during invasive range expansion in an introduced plant.一种外来植物在入侵范围扩张过程中的基因组大小变异与进化
Evol Appl. 2023 Dec 11;17(1):e13624. doi: 10.1111/eva.13624. eCollection 2024 Jan.
4
Novel Insights into the Nature of Intraspecific Genome Size Diversity in L.对L.种内基因组大小多样性本质的新见解
Plants (Basel). 2022 Oct 16;11(20):2736. doi: 10.3390/plants11202736.
5
The Application of Flow Cytometry for Estimating Genome Size, Ploidy Level Endopolyploidy, and Reproductive Modes in Plants.流式细胞术在植物基因组大小估计、倍性水平、内多倍体和繁殖方式中的应用。
Methods Mol Biol. 2021;2222:325-361. doi: 10.1007/978-1-0716-0997-2_17.
6
A reassessment of the genome size-invasiveness relationship in reed canarygrass (Phalaris arundinacea).对雀麦属(Phalaris arundinacea)基因组大小与入侵性关系的重新评估。
Ann Bot. 2018 Jun 8;121(7):1309-1318. doi: 10.1093/aob/mcy028.
7
Integral Phylogenomic Approach over Ilex L. Species from Southern South America.基于南美洲南部冬青属物种的完整系统基因组学方法。
Life (Basel). 2017 Nov 22;7(4):47. doi: 10.3390/life7040047.
8
First karyotype description and nuclear 2C value for (Primulaceae): comparing three species.报春花科(报春花属)的首次核型描述及2C核值:三种物种的比较
Comp Cytogenet. 2017 Mar 13;11(1):163-177. doi: 10.3897/CompCytogen.. eCollection 2017.
9
Genome size, cytogenetic data and transferability of EST-SSRs markers in wild and cultivated species of the genus Theobroma L. (Byttnerioideae, Malvaceae).可可属(锦葵科刺果藤亚科)野生和栽培物种的基因组大小、细胞遗传学数据及EST-SSR标记的可转移性
PLoS One. 2017 Feb 10;12(2):e0170799. doi: 10.1371/journal.pone.0170799. eCollection 2017.
10
Novel nuclei isolation buffer for flow cytometric genome size estimation of Zingiberaceae: a comparison with common isolation buffers.用于姜科植物流式细胞术基因组大小估计的新型细胞核分离缓冲液:与常用分离缓冲液的比较
Ann Bot. 2016 Nov;118(6):1057-1070. doi: 10.1093/aob/mcw173. Epub 2016 Sep 4.

本文引用的文献

1
Patterns of Endopolyploidy During Seedling Development in Cabbage ( Brassica oleracea L.).甘蓝(Brassica oleracea L.)幼苗发育过程中的内多倍体模式
Ann Bot. 2001 Feb 1;87(2):275-281. doi: 10.1006/anbo.2000.1337.
2
Rapid flow cytometric analysis of the cell cycle in intact plant tissues.快速流式细胞术分析完整植物组织中的细胞周期。
Science. 1983 Jun 3;220(4601):1049-51. doi: 10.1126/science.220.4601.1049.
3
Consequences of stoichiometric error on nuclear DNA content evaluation in Coffea liberica var. dewevrei using DAPI and propidium iodide.化学计量误差对利用DAPI和碘化丙啶评估利比里亚咖啡变种德氏咖啡核DNA含量的影响。
Ann Bot. 2002 Apr;89(4):385-9. doi: 10.1093/aob/mcf056.
4
Quantification of total genomic DNA and selected repetitive sequences reveals concurrent changes in different DNA families in indica and japonica rice.对总基因组DNA和选定重复序列的定量分析揭示了籼稻和粳稻中不同DNA家族的同步变化。
Mol Gen Genet. 2000 Apr;263(3):388-94. doi: 10.1007/s004380051182.
5
Reliable flow cytometric estimation of nuclear DNA content in coffee trees.咖啡树细胞核DNA含量的可靠流式细胞术估计
Cytometry. 1996 May 1;24(1):32-8. doi: 10.1002/(SICI)1097-0320(19960501)24:1<32::AID-CYTO4>3.0.CO;2-K.
6
A cytometric exercise in plant DNA histograms, with 2C values for 70 species.一项关于植物DNA直方图的细胞计数实验,包含70个物种的2C值。
Biol Cell. 1993;78(1-2):41-51. doi: 10.1016/0248-4900(93)90113-s.
7
Standardization of high-resolution flow cytometric DNA analysis by the simultaneous use of chicken and trout red blood cells as internal reference standards.通过同时使用鸡和鲑鱼红细胞作为内部参考标准来实现高分辨率流式细胞术DNA分析的标准化。
Cytometry. 1983 Mar;3(5):328-31. doi: 10.1002/cyto.990030504.
8
Studies on DNA binding of caffeine and derivatives: evidence of intercalation by DNA-unwinding experiments.
Biochim Biophys Acta. 1989 Jan 23;1007(1):112-5. doi: 10.1016/0167-4781(89)90138-3.
9
Reference standards for flow cytometry and application in comparative studies of nuclear DNA content.流式细胞术参考标准及其在核DNA含量比较研究中的应用。
Cytometry. 1989 Nov;10(6):706-10. doi: 10.1002/cyto.990100606.
10
Caffeine modulates the effects of DNA-intercalating drugs in vitro: a flow cytometric and spectrophotometric analysis of caffeine interaction with novantrone, doxorubicin, ellipticine, and the doxorubicin analogue AD198.咖啡因在体外调节DNA嵌入药物的作用:咖啡因与诺维本、阿霉素、玫瑰树碱及阿霉素类似物AD198相互作用的流式细胞术和分光光度法分析
Cancer Res. 1991 Jul 15;51(14):3682-9.