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仅为催化作用的一种近似攻击构象异构体(水中、抗体、酶及其突变体中分支酸向预苯酸的重排反应)

Just a near attack conformer for catalysis (chorismate to prephenate rearrangements in water, antibody, enzymes, and their mutants).

作者信息

Hur Sun, Bruice Thomas C

机构信息

Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106, USA.

出版信息

J Am Chem Soc. 2003 Sep 3;125(35):10540-2. doi: 10.1021/ja0357846.

DOI:10.1021/ja0357846
PMID:12940735
Abstract

Standard free energies for formation of ground-state reactive conformers (DeltaGN degrees ) and transition states (DeltaG) in the conversion of chorismate to prephenate in water, B. subtilis mutase, E. coli mutase, and their mutants, as well as a catalytic antibody, are related by DeltaG = DeltaGN degrees + 16 kcal/mol. Thus, the differences in the rate constants for the water reaction and catalysts reactions reside in the mole fraction of substrate present as reactive conformers (NACs). These results, and knowledge of the importance of transition state stabilization in other cases, suggest a proposal that enzymes utilize both NAC and transition state stabilization in the mix required for the most efficient catalysis.

摘要

在水中,分支酸转化为预苯酸的过程中,枯草芽孢杆菌变位酶、大肠杆菌变位酶及其突变体以及一种催化抗体形成基态反应性构象体(ΔG°N)和过渡态(ΔG)的标准自由能,通过ΔG = ΔG°N + 16千卡/摩尔相关联。因此,水反应和催化剂反应速率常数的差异在于以反应性构象体(NACs)形式存在的底物的摩尔分数。这些结果,以及在其他情况下过渡态稳定化重要性的知识,提出了一种观点,即酶在最有效催化所需的混合物中同时利用NAC和过渡态稳定化。

相似文献

1
Just a near attack conformer for catalysis (chorismate to prephenate rearrangements in water, antibody, enzymes, and their mutants).仅为催化作用的一种近似攻击构象异构体(水中、抗体、酶及其突变体中分支酸向预苯酸的重排反应)
J Am Chem Soc. 2003 Sep 3;125(35):10540-2. doi: 10.1021/ja0357846.
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Comparison of formation of reactive conformers (NACs) for the Claisen rearrangement of chorismate to prephenate in water and in the E. coli mutase: the efficiency of the enzyme catalysis.在水中以及大肠杆菌变位酶中,分支酸经克莱森重排生成预苯酸的反应性构象体(NACs)形成的比较:酶催化的效率
J Am Chem Soc. 2003 May 14;125(19):5964-72. doi: 10.1021/ja0210648.
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The near attack conformation approach to the study of the chorismate to prephenate reaction.用于研究分支酸向预苯酸反应的近攻击构象方法。
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Enzymes do what is expected (chalcone isomerase versus chorismate mutase).酶发挥着预期的作用(查尔酮异构酶与分支酸变位酶)。
J Am Chem Soc. 2003 Feb 12;125(6):1472-3. doi: 10.1021/ja0293047.
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Understanding the role of active-site residues in chorismate mutase catalysis from molecular-dynamics simulations.通过分子动力学模拟理解活性位点残基在分支酸变位酶催化中的作用。
Angew Chem Int Ed Engl. 2003 Apr 4;42(13):1508-11. doi: 10.1002/anie.200219878.
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The mechanism of catalysis of the chorismate to prephenate reaction by the Escherichia coli mutase enzyme.大肠杆菌变位酶催化分支酸转变为预苯酸反应的机制。
Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1176-81. doi: 10.1073/pnas.022628599. Epub 2002 Jan 29.
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Investigation of solvent effects for the Claisen rearrangement of chorismate to prephenate: mechanistic interpretation via near attack conformations.对分支酸重排为预苯酸的克莱森重排反应的溶剂效应研究:通过近攻构象进行机理阐释
J Am Chem Soc. 2003 Jun 4;125(22):6663-72. doi: 10.1021/ja021423z.
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Multiple-steering QM-MM calculation of the free energy profile in chorismate mutase.分支酸变位酶中自由能分布的多导向量子力学-分子力学计算
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Contributions of conformational compression and preferential transition state stabilization to the rate enhancement by chorismate mutase.分支酸变位酶通过构象压缩和优先稳定过渡态对速率增强的贡献。
J Am Chem Soc. 2003 Jun 11;125(23):6892-9. doi: 10.1021/ja021424r.
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Differential transition-state stabilization in enzyme catalysis: quantum chemical analysis of interactions in the chorismate mutase reaction and prediction of the optimal catalytic field.酶催化中的差异过渡态稳定化:分支酸变位酶反应中相互作用的量子化学分析及最佳催化场的预测
J Am Chem Soc. 2004 Dec 15;126(49):16148-59. doi: 10.1021/ja049376t.

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