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谷氨酸棒杆菌ATCC 13032全基因组序列及其对L-天冬氨酸衍生氨基酸和维生素生产的影响。

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.

作者信息

Kalinowski Jörn, Bathe Brigitte, Bartels Daniela, Bischoff Nicole, Bott Michael, Burkovski Andreas, Dusch Nicole, Eggeling Lothar, Eikmanns Bernhard J, Gaigalat Lars, Goesmann Alexander, Hartmann Michael, Huthmacher Klaus, Krämer Reinhard, Linke Burkhard, McHardy Alice C, Meyer Folker, Möckel Bettina, Pfefferle Walter, Pühler Alfred, Rey Daniel A, Rückert Christian, Rupp Oliver, Sahm Hermann, Wendisch Volker F, Wiegräbe Iris, Tauch Andreas

机构信息

Institut für Genomforschung, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany.

出版信息

J Biotechnol. 2003 Sep 4;104(1-3):5-25. doi: 10.1016/s0168-1656(03)00154-8.

Abstract

The complete genomic sequence of Corynebacterium glutamicum ATCC 13032, well-known in industry for the production of amino acids, e.g. of L-glutamate and L-lysine was determined. The C. glutamicum genome was found to consist of a single circular chromosome comprising 3282708 base pairs. Several DNA regions of unusual composition were identified that were potentially acquired by horizontal gene transfer, e.g. a segment of DNA from C. diphtheriae and a prophage-containing region. After automated and manual annotation, 3002 protein-coding genes have been identified, and to 2489 of these, functions were assigned by homologies to known proteins. These analyses confirm the taxonomic position of C. glutamicum as related to Mycobacteria and show a broad metabolic diversity as expected for a bacterium living in the soil. As an example for biotechnological application the complete genome sequence was used to reconstruct the metabolic flow of carbon into a number of industrially important products derived from the amino acid L-aspartate.

摘要

谷氨酸棒杆菌ATCC 13032是工业上用于生产氨基酸(如L-谷氨酸和L-赖氨酸)的著名菌株,其完整基因组序列已被测定。发现谷氨酸棒杆菌基因组由一条包含3282708个碱基对的单一环状染色体组成。鉴定出了几个组成异常的DNA区域,这些区域可能是通过水平基因转移获得的,例如来自白喉棒杆菌的一段DNA和一个含原噬菌体的区域。经过自动和人工注释,已鉴定出3002个蛋白质编码基因,其中2489个通过与已知蛋白质的同源性赋予了功能。这些分析证实了谷氨酸棒杆菌与分枝杆菌相关的分类地位,并显示出其作为一种生活在土壤中的细菌所预期的广泛代谢多样性。作为生物技术应用的一个例子,完整的基因组序列被用于重建碳代谢流,以生产许多源自氨基酸L-天冬氨酸的工业上重要的产品。

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