Rehm Bernd H A
Institut für Molekulare Mikrobiologie und Biotechnologie der Westfälischen Wilhelms-Universität Münster, Corrensstrasse 3, 48149 Münster, Germany.
Biochem J. 2003 Nov 15;376(Pt 1):15-33. doi: 10.1042/BJ20031254.
Polyhydroxyalkanoates (PHAs) are biopolyesters composed of hydroxy fatty acids, which represent a complex class of storage polyesters. They are synthesized by a wide range of different Gram-positive and Gram-negative bacteria, as well as by some Archaea, and are deposited as insoluble cytoplasmic inclusions. Polyester synthases are the key enzymes of polyester biosynthesis and catalyse the conversion of (R)-hydroxyacyl-CoA thioesters to polyesters with the concomitant release of CoA. These soluble enzymes turn into amphipathic enzymes upon covalent catalysis of polyester-chain formation. A self-assembly process is initiated resulting in the formation of insoluble cytoplasmic inclusions with a phospholipid monolayer and covalently attached polyester synthases at the surface. Surface-attached polyester synthases show a marked increase in enzyme activity. These polyester synthases have only recently been biochemically characterized. An overview of these recent findings is provided. At present, 59 polyester synthase structural genes from 45 different bacteria have been cloned and the nucleotide sequences have been obtained. The multiple alignment of the primary structures of these polyester synthases show an overall identity of 8-96% with only eight strictly conserved amino acid residues. Polyester synthases can been assigned to four classes based on their substrate specificity and subunit composition. The current knowledge on the organization of the polyester synthase genes, and other genes encoding proteins related to PHA metabolism, is compiled. In addition, the primary structures of the 59 PHA synthases are aligned and analysed with respect to highly conserved amino acids, and biochemical features of polyester synthases are described. The proposed catalytic mechanism based on similarities to alpha/beta-hydrolases and mutational analysis is discussed. Different threading algorithms suggest that polyester synthases belong to the alpha/beta-hydrolase superfamily, with a conserved cysteine residue as catalytic nucleophile. This review provides a survey of the known biochemical features of these unique enzymes and their proposed catalytic mechanism.
聚羟基脂肪酸酯(PHA)是由羟基脂肪酸组成的生物聚酯,代表了一类复杂的储存聚酯。它们由多种不同的革兰氏阳性菌和革兰氏阴性菌以及一些古生菌合成,并以不溶性细胞质内含物的形式沉积。聚酯合酶是聚酯生物合成的关键酶,催化(R)-羟基酰基辅酶A硫酯转化为聚酯,同时释放辅酶A。这些可溶性酶在聚酯链形成的共价催化作用下转变为两亲性酶。由此启动了一个自组装过程,导致形成具有磷脂单层且表面共价连接有聚酯合酶的不溶性细胞质内含物。表面附着的聚酯合酶的酶活性显著增加。这些聚酯合酶直到最近才得到生化特性鉴定。本文提供了这些最新发现的概述。目前,已克隆了来自45种不同细菌的59个聚酯合酶结构基因,并获得了核苷酸序列。这些聚酯合酶一级结构的多重比对显示总体一致性为8 - 96%,只有8个严格保守的氨基酸残基。基于底物特异性和亚基组成,聚酯合酶可分为四类。本文汇编了关于聚酯合酶基因以及其他编码与PHA代谢相关蛋白质的基因的组织的现有知识。此外,对59种PHA合酶的一级结构进行了比对,并针对高度保守的氨基酸进行了分析,还描述了聚酯合酶的生化特性。讨论了基于与α/β-水解酶的相似性和突变分析提出的催化机制。不同的穿线算法表明聚酯合酶属于α/β-水解酶超家族,有一个保守的半胱氨酸残基作为催化亲核试剂。本综述概述了这些独特酶的已知生化特性及其提出的催化机制。