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新种橙色鞘氨醇单胞菌、气载鞘氨醇单胞菌和嗜粪鞘氨醇单胞菌,空气和尘埃传播及来自南极的橙色、耐冷细菌,以及鞘氨醇单胞菌属的修订描述

Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas.

作者信息

Busse Hans-Jürgen, Denner Ewald B M, Buczolits Sandra, Salkinoja-Salonen Mirja, Bennasar Antonio, Kämpfer Peter

机构信息

Institut für Mikrobiologie und Genetik, Universität Wien, A-1030 Vienna, Austria.

Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität, A-1210 Vienna, Austria.

出版信息

Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1253-1260. doi: 10.1099/ijs.0.02461-0.

Abstract

Seven psychrotolerant, Gram-negative bacterial strains, five dust- and airborne isolates (MA101b(T), MA306a, MA405/90, MA-olki(T) and NW12(T)) and two from the Antarctic (Ant 20 and M3C203B-B), were subjected to a polyphasic characterization to determine their taxonomic position. High 16S rDNA sequences similarities (99.3-100.0 %) demonstrated that they were closely related to each other. Phylogenetic evaluation of their 16S rDNA sequences revealed that they are members of the genus Sphingomonas sensu stricto, encompassing a separate branch within this genus. They shared 94.4-96.6 % 16S rDNA sequence similarity with species of this genus. All Sphingomonas-specific signature nucleotides were also detected. The presence of the major ubiquinone Q-10, sym-homospermidine as the predominant polyamine, Sphingomonadaceae-specific sphingoglycolipid in the polar lipid patterns and a fatty acid profile containing C(14 : 0) 2-OH and lacking 3-OH fatty acids were in agreement with identification of these strains as members of the genus Sphingomonas sensu stricto. Results from DNA-DNA hybridizations and comparison of protein patterns indicated that the seven strains are members of three distinct species. One species is represented by strains MA101b(T), MA306a and MA405/90, the second by strains NW12(T), Ant 20 and M3C203B-B and the third by one strain, MA-olki(T). Their distinction at the species level was also supported by results of biochemical characterization and partly supported by riboprints and genomic fingerprints. On the basis of these results, three novel species of the genus Sphingomonas are proposed: Sphingomonas aurantiaca sp. nov., consisting of strains MA101b(T) (=DSM 14748(T)=LMG 21377(T)), MA306a and MA405/90 (=DSM 14749=LMG 21378), Sphingomonas faeni sp. nov. MA-olki(T) (=DSM 14747(T)=LMG 21379(T)) and Sphingomonas aerolata sp. nov., represented by strains NW12(T) (=DSM 14746(T)=LMG 21376(T)), Ant 20 (=ICMP 13599) and M3C203B-B (=SMCC M3C203B-B).

摘要

对7株耐冷革兰氏阴性细菌菌株进行了多相分类鉴定,以确定它们的分类地位。这7株菌中,5株分离自灰尘和空气(MA101b(T)、MA306a、MA405/90、MA-olki(T)和NW12(T)),2株来自南极(Ant 20和M3C203B-B)。16S rDNA序列相似度很高(99.3 - 100.0%),表明它们彼此密切相关。对其16S rDNA序列的系统发育评估显示,它们是严格意义上的鞘氨醇单胞菌属成员,在该属内构成一个单独的分支。它们与该属其他物种的16S rDNA序列相似度为94.4 - 96.6%。还检测到了所有鞘氨醇单胞菌属特异性的特征核苷酸。主要泛醌Q-10的存在、作为主要多胺的对称高亚精胺、极性脂质模式中鞘氨醇单胞菌科特异性的鞘糖脂以及含有C(14 : 0) 2-OH且缺乏3-OH脂肪酸的脂肪酸谱,均与这些菌株被鉴定为严格意义上的鞘氨醇单胞菌属成员一致。DNA-DNA杂交和蛋白质模式比较结果表明,这7株菌属于三个不同的物种。一个物种由菌株MA101b(T)、MA306a和MA405/90代表,第二个物种由菌株NW12(T)、Ant 20和M3C203B-B代表,第三个物种由一株菌MA-olki(T)代表。它们在种水平上的区分也得到了生化特征结果的支持,部分得到了核糖体印记和基因组指纹图谱的支持。基于这些结果,提出鞘氨醇单胞菌属的三个新物种:橙色鞘氨醇单胞菌(Sphingomonas aurantiaca)新种,由菌株MA101b(T)(=DSM 14748(T)=LMG 21377(T))、MA306a和MA405/90(=DSM 14749=LMG 21378)组成;嗜粪鞘氨醇单胞菌(Sphingomonas faeni)新种MA-olki(T)(=DSM 14747(T)=LMG 21379(T));气生鞘氨醇单胞菌(Sphingomonas aerolata)新种,由菌株NW12(T)(=DSM 14746(T)=LMG 21376(T))、Ant 20(=ICMP 13599)和M3C203B-B(=SMCC M3C203B-B)代表。

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