Carlson Corey M, Dupuy Adam J, Fritz Sabine, Roberg-Perez Kevin J, Fletcher Colin F, Largaespada David A
The Arnold and Mabel Beckman Center for Transposon Research, Institute of Human Genetics, Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis 55455, USA.
Genetics. 2003 Sep;165(1):243-56. doi: 10.1093/genetics/165.1.243.
Sleeping Beauty is a synthetic "cut-and-paste" transposon of the Tc1/mariner class. The Sleeping Beauty transposase (SB) was constructed on the basis of a consensus sequence obtained from an alignment of 12 remnant elements cloned from the genomes of eight different fish species. Transposition of Sleeping Beauty elements has been observed in cultured cells, hepatocytes of adult mice, one-cell mouse embryos, and the germline of mice. SB has potential as a random germline insertional mutagen useful for in vivo gene trapping in mice. Previous work in our lab has demonstrated transposition in the male germline of mice and transmission of novel inserted transposons in offspring. To determine sequence preferences and mutagenicity of SB-mediated transposition, we cloned and analyzed 44 gene-trap transposon insertion sites from a panel of 30 mice. The distribution and sequence content flanking these cloned insertion sites was compared to 44 mock insertion sites randomly selected from the genome. We find that germline SB transposon insertion sites are AT-rich and the sequence ANNTANNT is favored compared to other TA dinucleotides. Local transposition occurs with insertions closely linked to the donor site roughly one-third of the time. We find that approximately 27% of the transposon insertions are in transcription units. Finally, we characterize an embryonic lethal mutation caused by endogenous splicing disruption in mice carrying a particular intron-inserted gene-trap transposon.
“睡美人”是一种Tc1/水手类的合成“剪切粘贴”转座子。“睡美人”转座酶(SB)是基于从8种不同鱼类基因组中克隆的12个残余元件比对得到的共有序列构建的。在培养细胞、成年小鼠肝细胞、单细胞小鼠胚胎以及小鼠生殖系中均观察到了“睡美人”元件的转座现象。SB有潜力作为一种随机生殖系插入诱变剂,用于小鼠体内基因捕获。我们实验室之前的工作已证明在小鼠雄性生殖系中发生了转座,并在后代中传递了新插入的转座子。为了确定SB介导的转座的序列偏好性和诱变能力,我们从一组30只小鼠中克隆并分析了44个基因捕获转座子插入位点。将这些克隆插入位点两侧的分布和序列内容与从基因组中随机选择的44个模拟插入位点进行了比较。我们发现生殖系SB转座子插入位点富含AT,与其他TA二核苷酸相比,序列ANNTANNT更受青睐。大约三分之一的时间里,局部转座发生在与供体位点紧密相连的插入处。我们发现约27%的转座子插入位于转录单元中。最后,我们鉴定了携带特定内含子插入基因捕获转座子的小鼠中由内源性剪接破坏引起的胚胎致死突变。