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用于多肽主链和13Cβ化学位移归属的GFT NMR实验。

GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.

作者信息

Kim Seho, Szyperski Thomas

机构信息

Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, NY 14260, USA.

出版信息

J Biomol NMR. 2004 Feb;28(2):117-30. doi: 10.1023/B:JNMR.0000013827.20574.46.

Abstract

(4,3)D, (5,3)D and (5,2)D GFT triple resonance NMR experiments are presented for polypeptide backbone and (13)C(beta) resonance assignment of (15)N/(13)C labeled proteins. The joint sampling of m = 2, 3 or 4 indirect chemical shift evolution periods of 4D and 5D NMR experiments yields the measurement of 2(m) - 1 linear combinations of shifts. To obtain sequential assignments, these are matched in corresponding experiments delineating either intra or interresidue correlations. Hence, an increased set of matches is registered when compared to conventional approaches, and the 4D or 5D information allows one to efficiently break chemical shift degeneracy. Moreover, comparison of single-quantum chemical shifts obtained after a least squares fit using either the intra or the interresidue data demonstrates that GFT NMR warrants highly accurate shift measurements. The new features of GFT NMR based resonance assignment strategies promise to be of particular value for establishing automated protocols.

摘要

本文介绍了用于对(^{15}N/^{13}C)标记蛋白质的多肽主链和(^{13}C(\beta))共振进行归属的((4,3)D)、((5,3)D)和((5,2)D)广义频率标记(GFT)三重共振核磁共振实验。(4D)和(5D)核磁共振实验对(m = 2)、(3)或(4)个间接化学位移演化期进行联合采样,从而测量(2(m) - 1)个线性组合的化学位移。为了获得序列归属,将这些化学位移在描绘残基内或残基间相关性的相应实验中进行匹配。因此,与传统方法相比,可以记录到更多的匹配,并且(4D)或(5D)信息使人们能够有效地打破化学位移简并性。此外,使用残基内或残基间数据进行最小二乘拟合后得到的单量子化学位移的比较表明,GFT核磁共振能够保证非常精确的化学位移测量。基于GFT核磁共振的共振归属策略的新特性有望对建立自动化协议具有特别的价值。

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