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一种用于拟南芥中核苷酸鼠李糖合成的双功能3,5-表异构酶/4-酮还原酶。

A bifunctional 3,5-epimerase/4-keto reductase for nucleotide-rhamnose synthesis in Arabidopsis.

作者信息

Watt Gregory, Leoff Christine, Harper April D, Bar-Peled Maor

机构信息

Complex Carbohydrate Research Center and Department of Plant Biology, University of Georgia, Athens, Georgia 30602-4712, USA.

出版信息

Plant Physiol. 2004 Apr;134(4):1337-46. doi: 10.1104/pp.103.037192. Epub 2004 Mar 12.

DOI:10.1104/pp.103.037192
PMID:15020741
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC419811/
Abstract

l-Rhamnose is a component of plant cell wall pectic polysaccharides, diverse secondary metabolites, and some glycoproteins. The biosynthesis of the activated nucleotide-sugar form(s) of rhamnose utilized by the various rhamnosyltransferases is still elusive, and no plant enzymes involved in their synthesis have been purified. In contrast, two genes (rmlC and rmlD) have been identified in bacteria and shown to encode a 3,5-epimerase and a 4-keto reductase that together convert dTDP-4-keto-6-deoxy-Glc to dTDP-beta-l-rhamnose. We have identified an Arabidopsis cDNA that contains domains that share similarity to both reductase and epimerase. The Arabidopsis gene encodes a protein with a predicated molecular mass of approximately 33.5 kD that is transcribed in all tissue examined. The Arabidopsis protein expressed in, and purified from, Escherichia coli converts dTDP-4-keto-6-deoxy-Glc to dTDP-beta-l-rhamnose in the presence of NADPH. These results suggest that a single plant enzyme has both the 3,5-epimerase and 4-keto reductase activities. The enzyme has maximum activity between pH 5.5 and 7.5 at 30 degrees C. The apparent K(m) for NADPH is 90 microm and 16.9 microm for dTDP-4-keto-6-deoxy-Glc. The Arabidopsis enzyme can also form UDP-beta-l-rhamnose. To our knowledge, this is the first example of a bifunctional plant enzyme involved in sugar nucleotide synthesis where a single polypeptide exhibits the same activities as two separate prokaryotic enzymes.

摘要

L-鼠李糖是植物细胞壁果胶多糖、多种次生代谢产物和一些糖蛋白的组成成分。各种鼠李糖基转移酶所利用的鼠李糖的活化核苷酸糖形式的生物合成仍然不清楚,并且尚未纯化出参与其合成的植物酶。相比之下,已在细菌中鉴定出两个基因(rmlC和rmlD),并表明它们编码一种3,5-表异构酶和一种4-酮还原酶,它们共同将dTDP-4-酮-6-脱氧葡萄糖转化为dTDP-β-L-鼠李糖。我们鉴定出一个拟南芥cDNA,其包含与还原酶和表异构酶都具有相似性的结构域。该拟南芥基因编码一种预测分子量约为33.5 kD的蛋白质,在所检测的所有组织中均有转录。在大肠杆菌中表达并纯化的拟南芥蛋白在NADPH存在的情况下将dTDP-4-酮-6-脱氧葡萄糖转化为dTDP-β-L-鼠李糖。这些结果表明,一种单一的植物酶同时具有3,5-表异构酶和4-酮还原酶活性。该酶在30℃、pH 5.5至7.5之间具有最大活性。NADPH的表观K(m)为90微摩尔,dTDP-4-酮-6-脱氧葡萄糖的表观K(m)为16.9微摩尔。拟南芥酶也可以形成UDP-β-L-鼠李糖。据我们所知,这是参与糖核苷酸合成的双功能植物酶的第一个例子,其中单一多肽表现出与两种单独的原核酶相同的活性。

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本文引用的文献

1
The Biosynthesis of Sucrose and Nucleoside Diphosphate Glucoses in Phaseolus aureus.菜豆中蔗糖和核苷二磷酸葡萄糖的生物合成。
Plant Physiol. 1970 Jun;45(6):782-6. doi: 10.1104/pp.45.6.782.
2
Rhamnosyl transfer from TDPL-rhamnose catalyzed by a plant enzyme.由植物酶催化的从TDPL-鼠李糖进行的鼠李糖基转移反应。
Biochem Biophys Res Commun. 1961 Oct 23;6:44-8. doi: 10.1016/0006-291x(61)90182-6.
3
Paramecium bursaria Chlorella virus 1 encodes two enzymes involved in the biosynthesis of GDP-L-fucose and GDP-D-rhamnose.草履虫小球藻病毒1编码两种参与GDP-L-岩藻糖和GDP-D-鼠李糖生物合成的酶。
J Biol Chem. 2003 Jun 13;278(24):21559-65. doi: 10.1074/jbc.M301543200. Epub 2003 Apr 4.
4
Biosynthesis of UDP-xylose. Cloning and characterization of a novel Arabidopsis gene family, UXS, encoding soluble and putative membrane-bound UDP-glucuronic acid decarboxylase isoforms.UDP-木糖的生物合成。一个新的拟南芥基因家族UXS的克隆与特性分析,该家族编码可溶性和假定的膜结合UDP-葡萄糖醛酸脱羧酶同工型。
Plant Physiol. 2002 Dec;130(4):2188-98. doi: 10.1104/pp.009654.
5
Variation on a theme of SDR. dTDP-6-deoxy-L- lyxo-4-hexulose reductase (RmlD) shows a new Mg2+-dependent dimerization mode.SDR主题的变体。dTDP-6-脱氧-L-来苏糖-4-己酮糖还原酶(RmlD)呈现出一种新的Mg2+依赖性二聚化模式。
Structure. 2002 Jun;10(6):773-86. doi: 10.1016/s0969-2126(02)00770-0.
6
Concerted and stepwise dehydration mechanisms observed in wild-type and mutated Escherichia coli dTDP-glucose 4,6-dehydratase.在野生型和突变型大肠杆菌dTDP-葡萄糖4,6-脱水酶中观察到的协同和逐步脱水机制。
Biochemistry. 2002 Feb 26;41(8):2797-804. doi: 10.1021/bi011748c.
7
Functional cloning and characterization of a UDP- glucuronic acid decarboxylase: the pathogenic fungus Cryptococcus neoformans elucidates UDP-xylose synthesis.一种UDP-葡萄糖醛酸脱羧酶的功能克隆与特性分析:致病真菌新生隐球菌阐明了UDP-木糖的合成过程。
Proc Natl Acad Sci U S A. 2001 Oct 9;98(21):12003-8. doi: 10.1073/pnas.211229198. Epub 2001 Oct 2.
8
(Chemo)enzymatic synthesis of dTDP-activated 2,6-dideoxysugars as building blocks of polyketide antibiotics.(化学)酶促合成作为聚酮类抗生素结构单元的dTDP-活化2,6-二脱氧糖
Carbohydr Res. 2001 Sep 21;335(1):23-32. doi: 10.1016/s0008-6215(01)00195-1.
9
Pectins: structure, biosynthesis, and oligogalacturonide-related signaling.果胶:结构、生物合成及与寡聚半乳糖醛酸相关的信号传导
Phytochemistry. 2001 Jul;57(6):929-67. doi: 10.1016/s0031-9422(01)00113-3.
10
The crystal structure of dTDP-D-Glucose 4,6-dehydratase (RmlB) from Salmonella enterica serovar Typhimurium, the second enzyme in the dTDP-l-rhamnose pathway.鼠伤寒沙门氏菌中dTDP-D-葡萄糖4,6-脱水酶(RmlB)的晶体结构,dTDP-L-鼠李糖途径中的第二种酶。
J Mol Biol. 2001 Mar 16;307(1):283-95. doi: 10.1006/jmbi.2000.4470.