Ohtani Miwaka, Saka Ayaka, Sano Fumi, Ohya Yoshikazu, Morishita Shinichi
Department of Computer Science, University of Tokyo, Japan.
J Bioinform Comput Biol. 2004 Jan;1(4):695-709. doi: 10.1142/s0219720004000363.
Every living organism has its own species-specific morphology. Despite the relatively simple ellipsoidal shape of budding yeast cells, the global regulation of yeast morphology remains unclear. In the past, each mutated gene from many mutants with abnormal morphology had to be classified manually. To investigate the morphological characteristics of yeast in detail, we developed a novel image-processing program that extracts quantitative data from microscope images automatically. This program extracts data on cells that are often used by yeast morphology researchers, such as cell size, roundness, bud neck position angle, and bud growth direction, and fits an ellipse to the cell outline. We evaluated the ability of the program to extract quantitative parameters. The results suggest that our image-processing program can play a central objective role in yeast morphology studies.
每个生物体都有其特定物种的形态。尽管出芽酵母细胞的形状相对简单呈椭圆形,但酵母形态的整体调控仍不清楚。过去,许多形态异常的突变体中的每个突变基因都必须手动分类。为了详细研究酵母的形态特征,我们开发了一种新颖的图像处理程序,该程序可自动从显微镜图像中提取定量数据。该程序提取酵母形态研究人员常用的细胞数据,如细胞大小、圆度、芽颈位置角度和芽生长方向,并将椭圆拟合到细胞轮廓。我们评估了该程序提取定量参数的能力。结果表明,我们的图像处理程序可以在酵母形态研究中发挥核心客观作用。