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双链DNA噬菌体尾部组装基因中的保守翻译移码

Conserved translational frameshift in dsDNA bacteriophage tail assembly genes.

作者信息

Xu Jun, Hendrix Roger W, Duda Robert L

机构信息

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260 USA.

出版信息

Mol Cell. 2004 Oct 8;16(1):11-21. doi: 10.1016/j.molcel.2004.09.006.

Abstract

A programmed translational frameshift similar to frameshifts in retroviral gag-pol genes and bacterial insertion elements was found to be strongly conserved in tail assembly genes of dsDNA phages and to be independent of sequence similarities. In bacteriophage lambda, this frameshift controls production of two proteins with overlapping sequences, gpG and gpGT, that are required for tail assembly. We developed bioinformatic approaches to identify analogous -1 frameshifting sites and experimentally confirmed our predictions for five additional phages. Clear evidence was also found for an unusual but analogous -2 frameshift in phage Mu. Frameshifting sites could be identified for most phages with contractile or noncontractile tails whose length is controlled by a tape measure protein. Phages from a broad spectrum of hosts spanning Eubacteria and Archaea appear to conserve this frameshift as a fundamental component of their tail assembly mechanisms, supporting the idea that their tail genes share a common, distant ancestry.

摘要

一种类似于逆转录病毒gag-pol基因和细菌插入元件中的移码现象的程序性翻译移码,在双链DNA噬菌体的尾部组装基因中被发现高度保守,且与序列相似性无关。在噬菌体λ中,这种移码控制着两种具有重叠序列的蛋白质gpG和gpGT的产生,它们是尾部组装所必需的。我们开发了生物信息学方法来识别类似的-1移码位点,并通过实验证实了我们对另外五种噬菌体的预测。在噬菌体Mu中也发现了明确的证据,表明存在一种不寻常但类似的-2移码。对于大多数尾部收缩或不收缩且长度由卷尺蛋白控制的噬菌体,都可以识别出移码位点。来自广泛宿主(包括真细菌和古细菌)的噬菌体似乎将这种移码作为其尾部组装机制的基本组成部分加以保留,这支持了它们的尾部基因有着共同的、遥远祖先的观点。

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