Sankararaman Sumithra, Menon Gautam I, Kumar P B Sunil
The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600 113, India.
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Sep;70(3 Pt 1):031905. doi: 10.1103/PhysRevE.70.031905. Epub 2004 Sep 16.
We model the stable self-organized patterns obtained in the nonequilibrium steady states of mixtures of molecular motors and microtubules. In experiments [Nédélec et al., Nature (London) 389, 305 (1997); Surrey et al., Science 292, 1167 (2001)] performed in a quasi-two-dimensional geometry, microtubules are oriented by complexes of motor proteins. This interaction yields a variety of patterns, including arrangements of asters, vortices, and disordered configurations. We model this system via a two-dimensional vector field describing the local coarse-grained microtubule orientation and two scalar density fields associated to molecular motors. These scalar fields describe motors which either attach to and move along microtubules or diffuse freely within the solvent. Transitions between single aster, spiral, and vortex states are obtained as a consequence of confinement, as parameters in our model are varied. For systems in which the effects of confinement can be neglected, we present a map of nonequilibrium steady states, which includes arrangements of asters and vortices separately as well as aster-vortex mixtures and fully disordered states. We calculate the steady state distribution of bound and free motors in aster and vortex configurations of microtubules and compare these to our simulation results, providing qualitative arguments for the stability of different patterns in various regimes of parameter space. We study the role of crowding or "saturation" effects on the density profiles of motors in asters, discussing the role of such effects in stabilizing single asters. We also comment on the implications of our results for experiments.
我们对在分子马达与微管混合物的非平衡稳态中获得的稳定自组织模式进行建模。在准二维几何结构中进行的实验 [内德莱克等人,《自然》(伦敦)389, 305 (1997);萨里等人,《科学》292, 1167 (2001)] 里,微管由马达蛋白复合物定向排列。这种相互作用产生了多种模式,包括星状体排列、涡旋以及无序构型。我们通过一个二维向量场对该系统进行建模,该向量场描述局部粗粒度的微管取向,以及与分子马达相关的两个标量密度场。这些标量场描述了要么附着在微管上并沿其移动,要么在溶剂中自由扩散的马达。由于限制作用,随着我们模型中的参数变化,会出现从单星状体、螺旋态到涡旋态的转变。对于限制作用可忽略不计的系统,我们给出了一个非平衡稳态图,其中分别包括星状体排列和涡旋排列,以及星状体 - 涡旋混合态和完全无序态。我们计算了微管星状体和涡旋构型中结合态和自由态马达的稳态分布,并将其与我们的模拟结果进行比较,为参数空间不同区域中不同模式的稳定性提供定性依据。我们研究了拥挤或“饱和”效应在星状体中马达密度分布方面的作用,讨论了此类效应在稳定单星状体方面的作用。我们还评论了我们的结果对实验的意义。