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基于部分groEL基因序列的弯曲杆菌属物种的系统发育分析及PCR-限制性片段长度多态性鉴定

Phylogenetic analysis and PCR-restriction fragment length polymorphism identification of Campylobacter species based on partial groEL gene sequences.

作者信息

Kärenlampi R I, Tolvanen T P, Hänninen M-L

机构信息

Department of Food and Environmental Hygiene, Faculty of Veterinary Medicine, P.O. Box 66, University of Helsinki, FI-00014 Helsinki, Finland.

出版信息

J Clin Microbiol. 2004 Dec;42(12):5731-8. doi: 10.1128/JCM.42.12.5731-5738.2004.

Abstract

The phylogeny of 12 Campylobacter species and reference strains of Arcobacter butzleri and Helicobacter pylori was studied based on partial 593-bp groEL gene sequences. The topology of the phylogenetic neighbor-joining tree based on the groEL gene was similar to that of the tree based on the 16S rRNA gene. However, groEL was found to provide a better resolution for Campylobacter species, with lower interspecies sequence similarities (range, 65 to 94%) compared with those for the 16S rRNA gene (range, 90 to 99%) and high intraspecies sequence similarities (range, 95 to 100%; average, 99%). A new universal reverse primer that amplifies a 517-bp fragment of the groEL gene was developed and used for PCR-restriction fragment length polymorphism (PCR-RFLP) analysis of 68 strains representing 11 Campylobacter species as well as reference strains of A. butzlerii and H. pylori. Digestion with the AluI enzyme discriminated all Campylobacter species included in the study but showed more intraspecies diversity than digestion with the ApoI enzyme. A hippurate-negative variant of Campylobacter jejuni with a high level of groEL sequence similarity to both C. jejuni (96%) and C. coli (94%) gave a unique AluI profile and an ApoI profile identical to those of other C. jejuni strains. In conclusion, groEL gene sequencing and PCR-RFLP analysis are recommended as valuable tools for the identification of Campylobacter species.

摘要

基于部分593bp的groEL基因序列,对12种弯曲杆菌属菌种以及布氏嗜盐碱杆菌和幽门螺杆菌的参考菌株进行了系统发育研究。基于groEL基因构建的系统发育邻接树的拓扑结构与基于16S rRNA基因构建的树相似。然而,发现groEL基因能为弯曲杆菌属菌种提供更好的分辨率,其种间序列相似性较低(范围为65%至94%),而16S rRNA基因的种间序列相似性范围为90%至99%,且groEL基因的种内序列相似性较高(范围为95%至100%;平均为99%)。开发了一种新的通用反向引物,该引物可扩增groEL基因的517bp片段,并用于对代表11种弯曲杆菌属菌种的68株菌株以及布氏嗜盐碱杆菌和幽门螺杆菌的参考菌株进行PCR-限制性片段长度多态性(PCR-RFLP)分析。用AluI酶消化可区分研究中包括的所有弯曲杆菌属菌种,但与用ApoI酶消化相比,显示出更多的种内多样性。空肠弯曲菌的一种马尿酸盐阴性变体,其groEL序列与空肠弯曲菌(96%)和结肠弯曲菌(94%)的相似性都很高,它给出了独特的AluI图谱和与其他空肠弯曲菌菌株相同的ApoI图谱。总之,推荐将groEL基因测序和PCR-RFLP分析作为鉴定弯曲杆菌属菌种的有价值工具。

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