On Stephen L W, Miller William G, Houf Kurt, Fox James G, Vandamme Peter
Department of Wine, Food and Molecular Biosciences, Lincoln University, PO Box 85084, Lincoln, New Zealand.
U.S. Department of Agriculture, Produce Safety and Microbiology Research Unit, Agricultural Research Service, Albany, CA, USA.
Int J Syst Evol Microbiol. 2017 Dec;67(12):5296-5311. doi: 10.1099/ijsem.0.002255. Epub 2017 Oct 16.
Ongoing changes in taxonomic methods, and in the rapid development of the taxonomic structure of species assigned to the Epsilonproteobacteria have lead the International Committee of Systematic Bacteriology Subcommittee on the Taxonomy of Campylobacter and Related Bacteria to discuss significant updates to previous minimal standards for describing new species of Campylobacteraceae and Helicobacteraceae. This paper is the result of these discussions and proposes minimum requirements for the description of new species belonging to the families Campylobacteraceae and Helicobacteraceae, thus including species in Campylobacter, Arcobacter, Helicobacter, and Wolinella. The core underlying principle remains the use of appropriate phenotypic and genotypic methods to characterise strains sufficiently so as to effectively and unambiguously determine their taxonomic position in these families, and provide adequate means by which the new taxon can be distinguished from extant species and subspecies. This polyphasic taxonomic approach demands the use of appropriate reference data for comparison to ensure the novelty of proposed new taxa, and the recommended study of at least five strains to enable species diversity to be assessed. Methodological approaches for phenotypic and genotypic (including whole-genome sequence comparisons) characterisation are recommended.
分类学方法的不断变化,以及归属于ε-变形菌纲的物种分类结构的快速发展,促使国际系统细菌学委员会弯曲菌及相关细菌分类学小组委员会讨论对先前描述弯曲菌科和螺杆菌科新物种的最低标准进行重大更新。本文是这些讨论的结果,提出了描述弯曲菌科和螺杆菌科新物种的最低要求,其中包括弯曲菌属、弓形杆菌属、螺杆菌属和沃氏菌属中的物种。其核心基本原则仍然是使用适当的表型和基因型方法充分表征菌株,以便有效且明确地确定它们在这些科中的分类地位,并提供足够的手段来将新分类单元与现存物种和亚种区分开来。这种多相分类方法要求使用适当的参考数据进行比较,以确保所提议新分类单元的新颖性,并建议研究至少五个菌株以评估物种多样性。文中推荐了表型和基因型(包括全基因组序列比较)特征化的方法。