SNPNB：分析单核苷酸多态性（SNP）上的相邻核苷酸偏差。
SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).
作者信息
Zhang Fengkai, Zhao Zhongming
机构信息
Virginia Institute for Psychiatric and Behavioral Genetics, Virginia Commonwealth University, Richmond, VA 23298, USA.
出版信息
Bioinformatics. 2005 May 15;21(10):2517-9. doi: 10.1093/bioinformatics/bti377. Epub 2005 Mar 15.
UNLABELLED
SNPNB is a user-friendly and platform-independent application for analyzing Single Nucleotide Polymorphism NeighBoring sequence context and nucleotide bias patterns, and subsequently evaluating the effective SNP size for the bias patterns observed from the whole data. It was implemented by Java and Perl. SNPNB can efficiently handle genome-wide or chromosome-wide SNP data analysis in a PC or a workstation. It provides visualizations of the bias patterns for SNPs or each type of SNPs.
AVAILABILITY
SNPNB and its full description are freely available at http://bioinfo.vipbg.vcu.edu/SNPNB/
未标注
SNPNB是一个用户友好且与平台无关的应用程序，用于分析单核苷酸多态性邻域序列上下文和核苷酸偏差模式，并随后评估从整个数据中观察到的偏差模式的有效SNP大小。它由Java和Perl实现。SNPNB可以在个人计算机或工作站上高效地处理全基因组或全染色体范围的SNP数据分析。它提供了SNP或每种SNP类型的偏差模式的可视化。
可用性
SNPNB及其完整描述可在http://bioinfo.vipbg.vcu.edu/SNPNB/免费获取。
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