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DIAL: a web-based server for the automatic identification of structural domains in proteins.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W130-2. doi: 10.1093/nar/gki427.
2
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Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W602-5. doi: 10.1093/nar/gkh375.
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SMotif: a server for structural motifs in proteins.
Bioinformatics. 2007 Mar 1;23(5):637-8. doi: 10.1093/bioinformatics/btl679. Epub 2007 Jan 19.
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DDBASE2.0: updated domain database with improved identification of structural domains.
Bioinformatics. 2003 Sep 22;19(14):1760-4. doi: 10.1093/bioinformatics/btg233.
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GenDiS: Genomic Distribution of protein structural domain Superfamilies.
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Protein Peeling 2: a web server to convert protein structures into series of protein units.
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SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W274-6. doi: 10.1093/nar/gki493.
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NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in Proteins.
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PASS2: an automated database of protein alignments organised as structural superfamilies.
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SCRATCH: a protein structure and structural feature prediction server.
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引用本文的文献

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Hierarchical Analysis of Protein Structures: From Secondary Structures to Protein Units and Domains.
Methods Mol Biol. 2025;2870:357-370. doi: 10.1007/978-1-0716-4213-9_18.
2
Res-Dom: predicting protein domain boundary from sequence using deep residual network and Bi-LSTM.
Bioinform Adv. 2022 Sep 1;2(1):vbac060. doi: 10.1093/bioadv/vbac060. eCollection 2022.
3
Protein domain identification methods and online resources.
Comput Struct Biotechnol J. 2021 Feb 2;19:1145-1153. doi: 10.1016/j.csbj.2021.01.041. eCollection 2021.
4
IpdAB, a virulence factor in , is a cholesterol ring-cleaving hydrolase.
Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):E3378-E3387. doi: 10.1073/pnas.1717015115. Epub 2018 Mar 26.
5
Extending Protein Domain Boundary Predictors to Detect Discontinuous Domains.
PLoS One. 2015 Oct 26;10(10):e0141541. doi: 10.1371/journal.pone.0141541. eCollection 2015.
8
Structure-function analysis reveals a novel mechanism for regulation of histone demethylase LSD2/AOF1/KDM1b.
Cell Res. 2013 Feb;23(2):225-41. doi: 10.1038/cr.2012.177. Epub 2012 Dec 25.
9
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping.
Database (Oxford). 2011 Sep 29;2011:bar042. doi: 10.1093/database/bar042. Print 2011.

本文引用的文献

1
GenDiS: Genomic Distribution of protein structural domain Superfamilies.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D252-5. doi: 10.1093/nar/gki087.
2
CDD: a Conserved Domain Database for protein classification.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D192-6. doi: 10.1093/nar/gki069.
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High-throughput computational and experimental techniques in structural genomics.
Genome Res. 2004 Oct;14(10B):2145-54. doi: 10.1101/gr.2537904.
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iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.
Bioinformatics. 2005 Feb 1;21(3):410-2. doi: 10.1093/bioinformatics/bti011. Epub 2004 Sep 7.
5
iMOT: an interactive package for the selection of spatially interacting motifs.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W602-5. doi: 10.1093/nar/gkh375.
6
CHOP: parsing proteins into structural domains.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W569-71. doi: 10.1093/nar/gkh481.
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SH3 domain protein-binding arrays.
Methods Mol Biol. 2004;264:183-9. doi: 10.1385/1-59259-759-9:183.
8
The distribution and query systems of the RCSB Protein Data Bank.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D223-5. doi: 10.1093/nar/gkh096.
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The Pfam protein families database.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41. doi: 10.1093/nar/gkh121.
10
DDBASE2.0: updated domain database with improved identification of structural domains.
Bioinformatics. 2003 Sep 22;19(14):1760-4. doi: 10.1093/bioinformatics/btg233.

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