• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

快速染色质免疫沉淀测定法。

Fast chromatin immunoprecipitation assay.

作者信息

Nelson Joel D, Denisenko Oleg, Sova Pavel, Bomsztyk Karol

机构信息

Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98109, USA.

出版信息

Nucleic Acids Res. 2006 Jan 5;34(1):e2. doi: 10.1093/nar/gnj004.

DOI:10.1093/nar/gnj004
PMID:16397291
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1325209/
Abstract

Chromatin immunoprecipitation (ChIP) is a widely used method to explore in vivo interactions between proteins and DNA. The ChIP assay takes several days to complete, involves several tube transfers and uses either phenol-chlorophorm or spin columns to purify DNA. The traditional ChIP method becomes a challenge when handling multiple samples. We have developed an efficient and rapid Chelex resin-based ChIP procedure that dramatically reduces time of the assay and uses only a single tube to isolate PCR-ready DNA. This method greatly facilitates the probing of chromatin changes over many time points with several antibodies in one experiment.

摘要

染色质免疫沉淀(ChIP)是一种广泛用于探索蛋白质与DNA在体内相互作用的方法。ChIP分析需要几天时间才能完成,涉及多次试管转移,并使用酚-氯仿或离心柱来纯化DNA。在处理多个样本时,传统的ChIP方法成为一项挑战。我们开发了一种基于Chelex树脂的高效快速ChIP程序,该程序显著缩短了分析时间,并且仅使用单个试管来分离可用于PCR的DNA。这种方法极大地便于在一个实验中使用几种抗体在多个时间点探测染色质变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/e881a03cb631/gnj004f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/dd44d168487f/gnj004f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/5b4f58f04eaf/gnj004f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/e881a03cb631/gnj004f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/dd44d168487f/gnj004f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/5b4f58f04eaf/gnj004f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97bb/1325209/e881a03cb631/gnj004f3.jpg

相似文献

1
Fast chromatin immunoprecipitation assay.快速染色质免疫沉淀测定法。
Nucleic Acids Res. 2006 Jan 5;34(1):e2. doi: 10.1093/nar/gnj004.
2
The fast chromatin immunoprecipitation method.快速染色质免疫沉淀法
Methods Mol Biol. 2009;567:45-57. doi: 10.1007/978-1-60327-414-2_3.
3
Protocol for the fast chromatin immunoprecipitation (ChIP) method.快速染色质免疫沉淀(ChIP)方法的实验方案。
Nat Protoc. 2006;1(1):179-85. doi: 10.1038/nprot.2006.27.
4
Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events.基于微孔板的染色质免疫沉淀方法,基质染色质免疫沉淀:一个研究复杂基因组事件信号传导的平台。
Nucleic Acids Res. 2008 Feb;36(3):e17. doi: 10.1093/nar/gkn001. Epub 2008 Jan 18.
5
MicroChIP: chromatin immunoprecipitation for small cell numbers.微量染色质免疫沉淀法:用于少量细胞的染色质免疫沉淀
Methods Mol Biol. 2009;567:59-74. doi: 10.1007/978-1-60327-414-2_4.
6
Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast.用于研究芽殖酵母中蛋白质与DNA相互作用的染色质免疫沉淀技术。
Methods Mol Biol. 2006;313:225-44. doi: 10.1385/1-59259-958-3:225.
7
Quantification of protein-DNA interactions by in vivo chromatin immunoprecipitation in yeast.通过酵母体内染色质免疫沉淀对蛋白质 - DNA 相互作用进行定量分析。
Methods Mol Biol. 2012;809:149-56. doi: 10.1007/978-1-61779-376-9_10.
8
A chromatin immunoprecipitation protocol for small cell numbers.一种适用于少量细胞的染色质免疫沉淀实验方案。
Methods Mol Biol. 2011;791:179-93. doi: 10.1007/978-1-61779-316-5_14.
9
Faster and easier chromatin immunoprecipitation assay with high sensitivity.一种更快速、简便且具有高灵敏度的染色质免疫沉淀测定法。
Proteomics. 2007 Jan;7(1):10-4. doi: 10.1002/pmic.200600283.
10
Chromatin immunoprecipitation protocol for mammalian cells.哺乳动物细胞的染色质免疫沉淀实验方案
Methods Mol Biol. 2014;1164:33-8. doi: 10.1007/978-1-4939-0805-9_4.

引用本文的文献

1
Deciphering the YY1/ lncRNA BLACAT1/miR-605-3p axis in glioblastoma: implications for therapy.解析胶质母细胞瘤中YY1/lncRNA BLACAT1/miR-605-3p轴:对治疗的意义
NPJ Precis Oncol. 2025 Jul 1;9(1):213. doi: 10.1038/s41698-025-01001-9.
2
Identification of cancer-associated fibroblast subtypes and prognostic model development in breast cancer: role of the RUNX1/SDC1 axis in promoting invasion and metastasis.乳腺癌中癌症相关成纤维细胞亚型的鉴定及预后模型的建立:RUNX1/SDC1轴在促进侵袭和转移中的作用
Cell Biol Toxicol. 2025 Jan 3;41(1):21. doi: 10.1007/s10565-024-09950-w.
3
HSP90 N-terminal inhibition promotes mitochondria-derived vesicles related metastasis by reducing TFEB transcription via decreased HSP90AA1-HCFC1 interaction in liver cancer.

本文引用的文献

1
Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss.Htz1的全基因组动态变化,Htz1是一种组蛋白H2A变体,通过组蛋白缺失使抑制/基础启动子为激活做好准备。
Cell. 2005 Oct 21;123(2):219-31. doi: 10.1016/j.cell.2005.08.036.
2
Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density.活化的热休克因子引起的组蛋白全结构域位移独立于Swi/Snf发生,且与RNA聚合酶II密度无关。
Mol Cell Biol. 2005 Oct;25(20):8985-99. doi: 10.1128/MCB.25.20.8985-8999.2005.
3
Defining epigenetic states through chromatin and RNA.
热休克蛋白90(HSP90)N端抑制通过降低肝癌中HSP90AA1与HCFC1的相互作用减少转录因子EB(TFEB)转录,从而促进线粒体衍生囊泡相关的转移。
Autophagy. 2025 Mar;21(3):639-663. doi: 10.1080/15548627.2024.2421703. Epub 2024 Nov 11.
4
Mechanisms of HIF1A-mediated immune evasion in gastric cancer and the impact on therapy resistance.HIF1A 介导的胃癌免疫逃逸机制及其对治疗抵抗的影响。
Cell Biol Toxicol. 2024 Oct 10;40(1):87. doi: 10.1007/s10565-024-09917-x.
5
Deciphering the SOX4/MAPK1 regulatory axis: a phosphoproteomic insight into IQGAP1 phosphorylation and pancreatic Cancer progression.解析 SOX4/MAPK1 调控轴:IQGAP1 磷酸化和胰腺癌进展的磷酸化蛋白质组学见解。
J Transl Med. 2024 Jun 28;22(1):602. doi: 10.1186/s12967-024-05377-3.
6
Meta-analysis and transcriptomic analysis reveal that NKRF and ZBTB17 regulate the NF-κB signaling pathway, contributing to the shared molecular mechanisms of Alzheimer's disease and atherosclerosis.荟萃分析和转录组分析表明,NKRF 和 ZBTB17 调控 NF-κB 信号通路,共同参与阿尔茨海默病和动脉粥样硬化的分子机制。
CNS Neurosci Ther. 2024 May;30(5):e14683. doi: 10.1111/cns.14683.
7
Implications of IFNγ SNP rs2069705 in primary Sjögren's syndrome: transcriptional activation and B cell infiltration.IFNγ SNP rs2069705 在原发性干燥综合征中的意义:转录激活和 B 细胞浸润。
Am J Physiol Cell Physiol. 2024 May 1;326(5):C1494-C1504. doi: 10.1152/ajpcell.00661.2023. Epub 2024 Feb 26.
8
LncRNA HOTTIP regulates TLR4 promoter methylation by recruiting H3K4 methyltransferase MLL1 to affect apoptosis and inflammatory response of fibroblast-like synoviocyte in rheumatoid arthritis.长链非编码 RNA HOTTIP 通过招募 H3K4 甲基转移酶 MLL1 调节 TLR4 启动子甲基化,从而影响类风湿关节炎成纤维样滑膜细胞的凋亡和炎症反应。
Kaohsiung J Med Sci. 2024 Apr;40(4):335-347. doi: 10.1002/kjm2.12805. Epub 2024 Feb 16.
9
Amplification of poly(I:C)-induced interleukin-6 production in human bronchial epithelial cells by priming with interferon-γ.γ干扰素预刺激增强多聚肌苷酸多胞嘧啶核苷酸诱导的人支气管上皮细胞白细胞介素 6 产生。
Sci Rep. 2023 Nov 29;13(1):21067. doi: 10.1038/s41598-023-48422-9.
10
ATF2-driven osteogenic activity of enoxaparin sodium-loaded polymethylmethacrylate bone cement in femoral defect regeneration.依诺肝素钠负载聚甲基丙烯酸甲酯骨水泥通过 ATF2 驱动成骨活性促进股骨干缺损再生。
J Orthop Surg Res. 2023 Aug 31;18(1):646. doi: 10.1186/s13018-023-04017-8.
通过染色质和RNA定义表观遗传状态。
Nat Genet. 2005 Sep;37(9):917-8. doi: 10.1038/ng0905-917.
4
Reversing histone methylation.逆转组蛋白甲基化
Nature. 2005 Aug 25;436(7054):1103-6. doi: 10.1038/nature04048.
5
hnRNP K binds a core polypyrimidine element in the eukaryotic translation initiation factor 4E (eIF4E) promoter, and its regulation of eIF4E contributes to neoplastic transformation.异质性核糖核蛋白K(hnRNP K)与真核生物翻译起始因子4E(eIF4E)启动子中的一个核心嘧啶元件结合,其对eIF4E的调控促进肿瘤转化。
Mol Cell Biol. 2005 Aug;25(15):6436-53. doi: 10.1128/MCB.25.15.6436-6453.2005.
6
RNA meets chromatin.RNA与染色质相遇。
Genes Dev. 2005 Jul 15;19(14):1635-55. doi: 10.1101/gad.1324305.
7
Chromatin in need of a fix: phosphorylation of H2AX connects chromatin to DNA repair.需要修复的染色质:H2AX的磷酸化将染色质与DNA修复联系起来。
Mol Cell. 2005 Jun 10;18(6):617-22. doi: 10.1016/j.molcel.2005.05.008.
8
Heterochromatin formation involves changes in histone modifications over multiple cell generations.异染色质的形成涉及多个细胞世代中组蛋白修饰的变化。
EMBO J. 2005 Jun 15;24(12):2138-49. doi: 10.1038/sj.emboj.7600692. Epub 2005 May 26.
9
Histone dynamics on the interleukin-2 gene in response to T-cell activation.白细胞介素-2基因上组蛋白动力学对T细胞激活的响应。
Mol Cell Biol. 2005 Apr;25(8):3209-19. doi: 10.1128/MCB.25.8.3209-3219.2005.
10
Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.定义CREB调控子:转录因子调控区域的全基因组分析。
Cell. 2004 Dec 29;119(7):1041-54. doi: 10.1016/j.cell.2004.10.032.