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结构基因组学的影响:期望与成果

The impact of structural genomics: expectations and outcomes.

作者信息

Chandonia John-Marc, Brenner Steven E

机构信息

Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory, and Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.

出版信息

Science. 2006 Jan 20;311(5759):347-51. doi: 10.1126/science.1121018.

Abstract

Structural genomics (SG) projects aim to expand our structural knowledge of biological macromolecules while lowering the average costs of structure determination. We quantitatively analyzed the novelty, cost, and impact of structures solved by SG centers, and we contrast these results with traditional structural biology. The first structure identified in a protein family enables inference of the fold and of ancient relationships to other proteins; in the year ending 31 January 2005, about half of such structures were solved at a SG center rather than in a traditional laboratory. Furthermore, the cost of solving a structure at the most efficient SG center in the United States has dropped to one-quarter of the estimated cost of solving a structure by traditional methods. However, the efficiency of the top structural biology laboratories-even though they work on very challenging structures-is comparable to that of SG centers; moreover, traditional structural biology papers are cited significantly more often, suggesting greater current impact.

摘要

结构基因组学(SG)项目旨在拓展我们对生物大分子的结构认识,同时降低结构测定的平均成本。我们对SG中心解析的结构的新颖性、成本及影响力进行了定量分析,并将这些结果与传统结构生物学进行了对比。蛋白质家族中鉴定出的首个结构能够推断其折叠方式以及与其他蛋白质的古老关系;截至2005年1月31日的这一年里,约一半的此类结构是在SG中心而非传统实验室解析出来的。此外,美国效率最高的SG中心解析一个结构的成本已降至传统方法估计成本的四分之一。然而,顶尖结构生物学实验室的效率——即便它们研究的是极具挑战性的结构——与SG中心相当;而且,传统结构生物学论文的被引用频率要高得多,这表明其当前影响力更大。

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