Liberda Jonathan J, Schnarr Kara, Coulibaly Paulin, Boreham Douglas R
Department of Medical Physics and Applied Radiation Sciences, McMaster University, Hamilton, Ontario, Canada.
Int J Radiat Biol. 2005 Nov;81(11):827-40. doi: 10.1080/09553000600554283.
To develop an artificial neural network (ANN) model of apoptotic response in gamma irradiated human lymphocytes. To assess the feasibility of training ANN radiobiological models using data collected with flow cytometry.
Irradiated isolated human lymphocytes were labelled with Annexin V-Fluorescein Isothiocyanate (FITC) and 7-Amino-Actinomycin D (7AAD) then analysed using flow cytometry. Twenty-four dose responses per donor from 14 donors were collected from a flow cytometer and used in model development as the training and cross-validation datasets. The general ANN model architecture was a multi-layer perceptron using the mean squared error of a cross validation dataset as the objective function. The ANN model was optimized by varying the number of hidden layers and the number of processing elements per layer. The optimized model constituted of three hidden layers with 80, 40, and 10 hidden layers in the first, second, and third layers respectively.
The optimized model was used to simulate dose responses at the training doses of 0, 2, 4 and 8 Gray. A strong agreement between the model and measured dose responses was observed. The model was also used to simulate a dose response at 0.1 Gray and results were compared to the measured dose response from a donor not used in model development. Again, strong agreement between the model and the observed dose response was found.
This study shows that artificial neural networks can be trained to provide high resolution, high accuracy models of multivariate radiobiological data collected by flow cytometry.
建立伽马射线照射后人淋巴细胞凋亡反应的人工神经网络(ANN)模型。评估使用流式细胞术收集的数据训练ANN放射生物学模型的可行性。
将照射后的分离人淋巴细胞用膜联蛋白V-异硫氰酸荧光素(FITC)和7-氨基放线菌素D(7AAD)标记,然后用流式细胞术进行分析。从14名供体中收集每名供体的24个剂量反应数据,这些数据来自流式细胞仪,并用作模型开发中的训练和交叉验证数据集。通用的ANN模型架构是一个多层感知器,使用交叉验证数据集的均方误差作为目标函数。通过改变隐藏层的数量和每层的处理元素数量对ANN模型进行优化。优化后的模型由三个隐藏层组成,第一层、第二层和第三层分别有80、40和10个隐藏层。
优化后的模型用于模拟0、2、4和8格雷训练剂量下的剂量反应。观察到模型与测量的剂量反应之间有很强的一致性。该模型还用于模拟0.1格雷下的剂量反应,并将结果与未用于模型开发的供体的测量剂量反应进行比较。同样,在模型与观察到的剂量反应之间发现了很强的一致性。
本研究表明,可以训练人工神经网络以提供通过流式细胞术收集的多变量放射生物学数据的高分辨率、高精度模型。