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寡营养埃姆氏菌属,新属,新种,拟杆菌门“屈挠杆菌科”新成员。

Emticicia oligotrophica gen. nov., sp. nov., a new member of the family 'Flexibacteraceae', phylum Bacteroidetes.

作者信息

Saha P, Chakrabarti T

机构信息

Microbial Type Culture Collection and Gene Bank (MTCC), Institute of Microbial Technology, Sector 39A, Chandigarh 160 036, India.

出版信息

Int J Syst Evol Microbiol. 2006 May;56(Pt 5):991-995. doi: 10.1099/ijs.0.64086-0.

Abstract

An aquatic bacterium, strain GPTSA100-15T, was isolated on nutritionally poor medium TSBA100 (tryptic soy broth diluted 100 times and solidified with 1.5 % agarose) and characterized using a polyphasic approach. The isolate was unable to grow on commonly used nutritionally rich media such as tryptic soy agar, nutrient agar and Luria-Bertani agar. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolate was affiliated with the family 'Flexibacteraceae' in the phylum Bacteroidetes. Phylogenetically, it showed closest similarity (94.0 %) with an uncultured bacterial clone, HP1A92, detected in a sludge microbial community. Among the culturable bacteria, the isolate had highest 16S rRNA gene sequence similarity with Leadbetterella byssophila 4M15T (87.8 %). Sequence similarities with other members of the phylum Bacteroidetes were less than 85 %. The fatty acid profile of the isolate grown on TSBA100 indicated that the major fatty acid was iso-C15:0, which is also present in many members of the family 'Flexibacteraceae'. Cells of strain GPTSA100-15T are Gram-negative, strictly aerobic rods. The DNA G+C content of the isolate is 36.9 mol%. Results of phenotypic, chemotaxonomic and phylogenetic analyses clearly indicate that strain GPTSA100-15T represents a new genus within the family 'Flexibacteraceae'; the name Emticicia gen. nov. is proposed for the genus, with Emticicia oligotrophica sp. nov. as the type species. The type strain of Emticicia oligotrophica is GPTSA100-15T (=MTCC 6937T=DSM 17448T).

摘要

从营养贫瘠的TSBA100培养基(胰蛋白胨大豆肉汤稀释100倍并用1.5%琼脂糖固化)中分离出一株水生细菌,菌株GPTSA100 - 15T,并采用多相分类法对其进行了鉴定。该分离株无法在常用的营养丰富的培养基上生长,如胰蛋白胨大豆琼脂、营养琼脂和Luria - Bertani琼脂。基于16S rRNA基因序列的系统发育分析表明,该分离株属于拟杆菌门中的“Flexibacteraceae”科。在系统发育上,它与在污泥微生物群落中检测到的未培养细菌克隆HP1A92相似度最高(94.0%)。在可培养细菌中,该分离株与嗜藻莱德杆菌4M15T的16S rRNA基因序列相似度最高(87.8%)。与拟杆菌门其他成员的序列相似度低于85%。在TSBA100上生长的该分离株的脂肪酸谱表明,主要脂肪酸为异C15:0,这在“Flexibacteraceae”科的许多成员中也存在。菌株GPTSA100 - 15T的细胞为革兰氏阴性、严格需氧的杆菌。该分离株的DNA G + C含量为36.9 mol%。表型、化学分类和系统发育分析结果清楚地表明,菌株GPTSA100 - 15T代表“Flexibacteraceae”科内的一个新属;提议将该属命名为Emticicia gen. nov.,将嗜寡营养埃姆蒂西亚菌(Emticicia oligotrophica sp. nov.)作为模式种。嗜寡营养埃姆蒂西亚菌的模式菌株为GPTSA100 - 15T(=MTCC 6937T = DSM 17448T)。

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