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顺磁金属蛋白的核磁共振结构

NMR structures of paramagnetic metalloproteins.

作者信息

Arnesano Fabio, Banci Lucia, Piccioli Mario

机构信息

Magnetic Resonance Center (CERM) and Department of Chemistry, University of Florence, Italy.

出版信息

Q Rev Biophys. 2005 May;38(2):167-219. doi: 10.1017/S0033583506004161. Epub 2006 May 4.

DOI:10.1017/S0033583506004161
PMID:16674835
Abstract

Metalloproteins represent a large share of the proteome and many of them contain paramagnetic metal ions. The knowledge, at atomic resolution, of their structure in solution is important to understand processes in which they are involved, such as electron transfer mechanisms, enzymatic reactions, metal homeostasis and metal trafficking, as well as interactions with their partners. Formerly considered as unfeasible, the first structure in solution by nuclear magnetic resonance (NMR) of a paramagnetic protein was obtained in 1994. Methodological and instrumental advancements pursued over the last decade are such that NMR structure of paramagnetic proteins may be now routinely obtained. We focus here on approaches and problems related to the structure determination of paramagnetic proteins in solution through NMR spectroscopy. After a survey of the background theory, we show how the effects produced by the presence of a paramagnetic metal ion on the NMR parameters, which are in many cases deleterious for the detection of NMR spectra, can be overcome and turned into an additional source of structural restraints. We also briefly address features and perspectives given by the use of 13C-detected protonless NMR spectroscopy for proteins in solution. The structural information obtained through the exploitation of a paramagnetic center are discussed for some Cu2+ -binding proteins and for Ca2+ -binding proteins, where the replacement of a diamagnetic metal ion with suitable paramagnetic metal ions suggests novel approaches to the structural characterization of proteins containing diamagnetic and NMR-silent metal ions.

摘要

金属蛋白在蛋白质组中占很大比例,其中许多含有顺磁性金属离子。在原子分辨率下了解它们在溶液中的结构,对于理解它们所参与的过程很重要,比如电子转移机制、酶促反应、金属稳态和金属运输,以及与它们的伙伴的相互作用。顺磁性蛋白质的溶液中首个通过核磁共振(NMR)得到的结构在1994年被测定,此前这被认为是不可行的。过去十年在方法学和仪器方面取得的进展,使得现在可以常规地获得顺磁性蛋白质的NMR结构。我们在此聚焦于通过NMR光谱法测定溶液中顺磁性蛋白质结构相关的方法和问题。在对背景理论进行概述之后,我们展示了顺磁性金属离子的存在对NMR参数产生的影响(在许多情况下对NMR光谱的检测是有害的)如何能够被克服,并转化为结构限制的额外来源。我们还简要介绍了使用13C检测的无质子NMR光谱法对溶液中蛋白质的特点和前景。对于一些结合Cu2+的蛋白质和结合Ca2+的蛋白质,讨论了通过利用顺磁性中心获得的结构信息,其中用合适的顺磁性金属离子取代抗磁性金属离子,为含有抗磁性且无NMR信号的金属离子的蛋白质的结构表征提供了新方法。

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