利用统一医学语言系统进行术语之间的语义映射。
Utilizing the UMLS for semantic mapping between terminologies.
作者信息
Fung Kin Wah, Bodenreider Olivier
机构信息
National Library of Medicine, Bethesda, Maryland, USA. {kwfung|olivier}@nlm.nih.gov
出版信息
AMIA Annu Symp Proc. 2005;2005:266-70.
Abstract
An algorithm was derived to find candidate mappings between any two terminologies inside the UMLS, making use of synonymy, explicit mapping relations and hierarchical relationships among UMLS concepts. Using an existing set of mappings from SNOMED CT to ICD9CM as our gold standard, we managed to find candidate mappings for 86% of SNOMED CT terms, with recall of 42% and precision of 20%. Among the various methods used, mapping by UMLS synonymy was particularly accurate and could potentially be useful as a quality assurance tool in the creation of mapping sets or in the UMLS editing process. Other strengths and weaknesses of the algorithm are discussed.
摘要
我们推导了一种算法，利用统一医学语言系统（UMLS）中概念间的同义关系、显式映射关系和层次关系，来寻找UMLS内任意两个术语之间的候选映射。以从医学系统命名法临床术语（SNOMED CT）到国际疾病分类第九版临床修订本（ICD9CM）的现有映射集作为金标准，我们成功为86%的SNOMED CT术语找到了候选映射，召回率为42%，精确率为20%。在使用的各种方法中，通过UMLS同义词进行映射特别准确，在创建映射集或UMLS编辑过程中，有可能作为一种质量保证工具。我们还讨论了该算法的其他优缺点。
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本文引用的文献
1
2
Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies.超越同义词：在映射词汇表中利用统一医学语言系统语义
Proc AMIA Symp. 1998:815-9.
3
Evaluation of a "lexically assign, logically refine" strategy for semi-automated integration of overlapping terminologies.一种用于重叠术语半自动整合的“词汇分配，逻辑细化”策略的评估。
J Am Med Inform Assoc. 1998 Mar-Apr;5(2):203-13. doi: 10.1136/jamia.1998.0050203.
4
The Unified Medical Language System: an informatics research collaboration.统一医学语言系统：一项信息学研究合作。
J Am Med Inform Assoc. 1998 Jan-Feb;5(1):1-11. doi: 10.1136/jamia.1998.0050001.
5
Review paper: coding systems in health care.综述论文：医疗保健中的编码系统
Methods Inf Med. 1996 Dec;35(4-5):273-84.
6
The Unified Medical Language System.统一医学语言系统
Methods Inf Med. 1993 Aug;32(4):281-91. doi: 10.1055/s-0038-1634945.
7
Automated translation between medical vocabularies using a frame-based interlingua.使用基于框架的中间语言实现医学词汇之间的自动翻译。
Proc Annu Symp Comput Appl Med Care. 1993:690-4.
8
Mapping clinically useful terminology to a controlled medical vocabulary.将临床有用术语映射到受控医学词汇表。
Proc Annu Symp Comput Appl Med Care. 1994:211-5.
9
Using digrams to map controlled medical vocabularies.使用双词组合来映射受控医学词汇表。
Proc Annu Symp Comput Appl Med Care. 1994:172-6.
10
Automated translation between medical terminologies using semantic definitions.使用语义定义实现医学术语之间的自动翻译。
MD Comput. 1990 Mar-Apr;7(2):104-9.
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