Lehnert Nicolai, Praneeth V K K, Paulat Florian
Institut für Anorganische Chemie, Christian-Albrechts-Universität Kiel, Olshausenstrasse 40, D-24098 Kiel, Germany.
J Comput Chem. 2006 Sep;27(12):1338-51. doi: 10.1002/jcc.20400.
Density functional calculations are employed to investigate key intermediates of the catalytic cycle of fungal nitric oxide reductase (P450nor). The formal Fe(II)-nitroxyl species Fe(II)--NO/(-) can principally exist in the two spin-states S = 0 and S = 1. In the S = 0 case, a very covalent Fe--NO sigma bond is present, which leads to an electronic structure description that is actually intermediate between Fe(I)--NO and Fe(II)--NO(-). In contrast, the S = 1 case shows a ferrous Fe(II)--NO complex with the extra electron being stored in the pi system of the porphyrin ligand. Importantly, the Fe(II)--NO/(-) species are very basic. The electronic structures and spectroscopic properties of the corresponding N- and O-protonated forms are very different, and unequivocally show that the Mb-HNO adduct (Mb-Myoglobin) prepared by farmer and coworkers is in fact N-protonated. The presence of an axial thiolate ligand enables a second protonation leading to the corresponding Fe(IV)--NHOH- species, which is identified with the catalytically active intermediate I of P450nor. This species reacts with a second molecule of NO by initial electron transfer from NO to Fe(IV) followed by addition of NO+ forming an N--N bond. This is accompanied by an energetically very favorable intramolecular proton transfer leading to the generation of a quite stable Fe(III)--N(OH)(NOH) complex. This way, the enzyme is able to produce dimerized HNO under very controlled conditions and to prevent loss of this ligand from Fe(III). The energetically disfavoured tautomer Fe(III)--N(OH2)(NO) is the catalytically productive species that spontaneously cleaves the N--OH2 bond forming N2O and H2O in a highly exergonic reaction.
采用密度泛函计算方法研究真菌一氧化氮还原酶(P450nor)催化循环的关键中间体。形式上的Fe(II)-硝酰基物种Fe(II)--NO/(-)主要可以存在于两种自旋态S = 0和S = 1。在S = 0的情况下,存在一个非常共价的Fe--NO σ键,这导致一种电子结构描述,实际上介于Fe(I)--NO和Fe(II)--NO(-)之间。相比之下,S = 1的情况显示为亚铁Fe(II)--NO配合物,额外的电子存储在卟啉配体的π体系中。重要的是,Fe(II)--NO/(-)物种碱性很强。相应的N-和O-质子化形式的电子结构和光谱性质非常不同,明确表明Farmer及其同事制备的肌红蛋白-HNO加合物(Mb-肌红蛋白)实际上是N-质子化的。轴向硫醇盐配体的存在使得能够进行第二次质子化,生成相应的Fe(IV)--NHOH-物种,该物种被确定为P450nor的催化活性中间体I。该物种与第二个NO分子反应,首先是电子从NO转移到Fe(IV),然后添加NO+形成N--N键。这伴随着一个能量上非常有利的分子内质子转移,导致生成一个相当稳定的Fe(III)--N(OH)(NOH)配合物。通过这种方式,该酶能够在非常可控的条件下产生二聚化的HNO,并防止这种配体从Fe(III)上流失。能量上不利的互变异构体Fe(III)--N(OH2)(NO)是催化活性物种,它在一个高度放能的反应中自发地断裂N--OH2键,形成N2O和H2O。