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用于脊椎动物物种鉴定的两套通用引物组。

Two universal primer sets for species identification among vertebrates.

作者信息

Kitano Takashi, Umetsu Kazuo, Tian Wei, Osawa Motoki

机构信息

Department of Experimental and Forensic Pathology, Faculty of Medicine, Yamagata University, Yamagata, Japan.

出版信息

Int J Legal Med. 2007 Sep;121(5):423-7. doi: 10.1007/s00414-006-0113-y. Epub 2006 Jul 15.

Abstract

The aim of this study was to develop a simple method using universal primers for species identification based on direct PCR sequencing. Two primer sets were designed based on the conserved regions of the 12S and 16S rRNA loci detected by the comprehensive sequence comparison among 30 mammalian whole mitochondrial genomes. In humans, the expected sizes of PCR products of the 12S and 16S rRNAs were 215 and 244 bp, respectively. Both primer sets successfully amplified the expected PCR products from various kinds of vertebrates including mammals, birds, reptiles, amphibians, and fish, and the sequenced segments contained sufficient nucleotide differences to identify each animal species. A case example of the identification of a piece of buried bone of unknown species is presented, and the species was identified as a pig by this method.

摘要

本研究的目的是开发一种基于直接PCR测序,使用通用引物进行物种鉴定的简单方法。基于对30个哺乳动物全线粒体基因组进行全面序列比较后检测到的12S和16S rRNA基因座的保守区域,设计了两组引物。在人类中,12S和16S rRNA的PCR产物预期大小分别为215和244 bp。两组引物均成功地从包括哺乳动物、鸟类、爬行动物、两栖动物和鱼类在内的各种脊椎动物中扩增出预期的PCR产物,并且测序片段包含足够的核苷酸差异以鉴定每个动物物种。文中给出了一个鉴定一块未知物种埋藏骨头的案例,通过这种方法该物种被鉴定为猪。

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