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用于分析分子遗传变异数据的现代计算方法。

Modern computational approaches for analysing molecular genetic variation data.

作者信息

Marjoram Paul, Tavaré Simon

机构信息

University of Southern California, Keck School of Medicine, Preventive Medicine, 1540 Alcazar Street, CHP-220, Los Angeles, California 90089-99011, USA.

出版信息

Nat Rev Genet. 2006 Oct;7(10):759-70. doi: 10.1038/nrg1961.

Abstract

An explosive growth is occurring in the quantity, quality and complexity of molecular variation data that are being collected. Historically, such data have been analysed by using model-based methods. Models are useful for sharpening intuition, for explanation and for prediction: they add to our understanding of how the data were formed, and they can provide quantitative answers to questions of interest. We outline some of these model-based approaches, including the coalescent, and discuss the applicability of the computational methods that are necessary given the highly complex nature of current and future data sets.

摘要

正在收集的分子变异数据在数量、质量和复杂性方面都呈现出爆发式增长。从历史上看,此类数据一直通过基于模型的方法进行分析。模型有助于增强直觉、进行解释和预测:它们能加深我们对数据形成方式的理解,还能为感兴趣的问题提供定量答案。我们概述了一些基于模型的方法,包括溯祖理论,并讨论了鉴于当前和未来数据集的高度复杂性而必需的计算方法的适用性。

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