SIRE-1，一种假定的植物逆转录病毒，与豆科植物TY1- copia逆转座子家族密切相关。
SIRE-1, a putative plant retrovirus is closely related to a legume TY1-copia retrotransposon family.
作者信息
Pearce Stephen R
机构信息
School of Life-Sciences, Department of Biology and Environmental Science, University of Sussex, Falmer, Brighton, United Kingdom.
出版信息
Cell Mol Biol Lett. 2007;12(1):120-6. doi: 10.2478/s11658-006-0053-z. Epub 2006 Nov 19.
Abstract
SIRE-1 is a potential soybean retrovirus which has a gene order similar to Ty1-copia retrotransposons but also contains an envelope-like open reading frame (ORF), which is characteristic of retroviruses. PCR and Southern analysis reveals that SIRE-1 is closely related to a legume-wide family of envelope-lacking Ty1-copia group retrotransposons which suggests that SIRE-1 was formed by the recent acquisition of an envelope gene by a Ty1-copia retrotransposon.
摘要
SIRE-1是一种潜在的大豆逆转录病毒，其基因顺序与Ty1-copia逆转座子相似，但也包含一个类似包膜的开放阅读框（ORF），这是逆转录病毒的特征。PCR和Southern分析表明，SIRE-1与豆科植物中缺乏包膜的Ty1-copia类逆转座子家族密切相关，这表明SIRE-1是由Ty1-copia逆转座子最近获得包膜基因而形成的。
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本文引用的文献
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Mol Genet Genomics. 2005 Mar;273(1):43-53. doi: 10.1007/s00438-004-1092-7. Epub 2005 Jan 25.
2
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Mol Biol Evol. 2003 Aug;20(8):1222-30. doi: 10.1093/molbev/msg142. Epub 2003 May 30.
3
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Mol Biol Evol. 2002 Nov;19(11):1832-45. doi: 10.1093/oxfordjournals.molbev.a004008.
4
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Genome Res. 2002 Jan;12(1):122-31. doi: 10.1101/gr.196001.
5
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Genome Res. 2001 Dec;11(12):2041-9. doi: 10.1101/gr.193301.
6
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7
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10
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Plant J. 1999 Sep;19(6):711-7. doi: 10.1046/j.1365-313x.1999.00556.x.
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