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生物网络构建器:生物网络的自动整合

BioNetBuilder: automatic integration of biological networks.

作者信息

Avila-Campillo Iliana, Drew Kevin, Lin John, Reiss David J, Bonneau Richard

机构信息

Department of Biology, New York University, New York, NY, USA.

出版信息

Bioinformatics. 2007 Feb 1;23(3):392-3. doi: 10.1093/bioinformatics/btl604. Epub 2006 Nov 30.

Abstract

UNLABELLED

BioNetBuilder is an open-source client-server Cytoscape plugin that offers a user-friendly interface to create biological networks integrated from several databases. Users can create networks for approximately 1500 organisms, including common model organisms and human. Currently supported databases include: DIP, BIND, Prolinks, KEGG, HPRD, The BioGrid and GO, among others. The BioNetBuilder plugin client is available as a Java Webstart, providing a platform-independent network interface to these public databases.

AVAILABILITY

http://err.bio.nyu.edu/cytoscape/bionetbuilder/

摘要

未加标注

BioNetBuilder是一个开源的客户端-服务器Cytoscape插件,它提供了一个用户友好的界面来创建从多个数据库整合而来的生物网络。用户可以为大约1500种生物创建网络,包括常见的模式生物和人类。目前支持的数据库包括:DIP、BIND、Prolinks、KEGG、HPRD、生物网格(The BioGrid)和基因本体(GO)等。BioNetBuilder插件客户端以Java Webstart的形式提供,为这些公共数据库提供了一个独立于平台的网络接口。

可用性

http://err.bio.nyu.edu/cytoscape/bionetbuilder/

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