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在Ln3+离子存在下对微秒时间尺度蛋白质动力学的观察:应用于心肌肌钙蛋白C的N端结构域

Observation of microsecond time-scale protein dynamics in the presence of Ln3+ ions: application to the N-terminal domain of cardiac troponin C.

作者信息

Eichmüller Christian, Skrynnikov Nikolai R

机构信息

Department of Chemistry, Purdue University, West Lafayette, IN 47907-2084, USA.

出版信息

J Biomol NMR. 2007 Feb;37(2):79-95. doi: 10.1007/s10858-006-9105-y. Epub 2006 Dec 19.

DOI:10.1007/s10858-006-9105-y
PMID:17180551
Abstract

The microsecond time-scale motions in the N-terminal domain of cardiac troponin C (NcTnC) loaded with lanthanide ions have been investigated by means of a (1)H(N) off-resonance spin-lock experiment. The observed relaxation dispersion effects strongly increase along the series of NcTnC samples containing La(3+), Ce(3+), and Pr(3+) ions. This rise in dispersion effects is due to modulation of long-range pseudocontact shifts by micros time-scale dynamics. Specifically, the motion in the coordination sphere of the lanthanide ion (i.e. in the NcTnC EF-hand motif) causes modulation of the paramagnetic susceptibility tensor which, in turn, causes modulation of pseudocontact shifts. It is also probable that opening/closing dynamics, previously identified in Ca(2+)-NcTnC, contributes to some of the observed dispersions. On the other hand, it is unlikely that monomer-dimer exchange in the solution of NcTnC is directly responsible for the dispersion effects. Finally, on-off exchange of the lanthanide ion does not seem to play any significant role. The amplification of dispersion effects by Ln(3+) ions is a potentially useful tool for studies of micros-ms motions in proteins. This approach makes it possible to observe the dispersions even when the local environment of the reporting spin does not change. This happens, for example, when the motion involves a 'rigid' structural unit such as individual alpha-helix. Even more significantly, the dispersions based on pseudocontact shifts offer better chances for structural characterization of the dynamic species. This method can be generalized for a large class of applications via the use of specially designed lanthanide-binding tags.

摘要

通过¹H(N)非共振自旋锁定实验,研究了负载镧系离子的心肌肌钙蛋白C(NcTnC)N端结构域中的微秒时间尺度运动。在含有La³⁺、Ce³⁺和Pr³⁺离子的一系列NcTnC样品中,观察到的弛豫色散效应显著增强。色散效应的这种增加是由于微秒时间尺度动力学对长程赝接触位移的调制。具体而言,镧系离子配位球中的运动(即在NcTnC EF手基序中)导致顺磁磁化率张量的调制,进而导致赝接触位移的调制。之前在Ca²⁺-NcTnC中确定的打开/关闭动力学也可能是一些观察到的色散的原因。另一方面,NcTnC溶液中的单体-二聚体交换不太可能直接导致色散效应。最后,镧系离子的开-关交换似乎没有起到任何显著作用。Ln³⁺离子对色散效应的放大是研究蛋白质中微秒-毫秒运动的一种潜在有用工具。即使报告自旋的局部环境没有变化,这种方法也能够观察到色散。例如,当运动涉及一个“刚性”结构单元(如单个α螺旋)时就会发生这种情况。更重要的是,基于赝接触位移的色散为动态物种的结构表征提供了更好的机会。通过使用专门设计的镧系结合标签,这种方法可以推广到一大类应用中。

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