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从酵母、原生生物到人类的抗酶mRNA解码过程中的核糖体移码:近300个案例揭示了尽管存在潜在的保守性,但仍具有显著的多样性。

Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation.

作者信息

Ivanov Ivaylo P, Atkins John F

机构信息

Biosciences Institute, University College Cork, Cork, Ireland.

出版信息

Nucleic Acids Res. 2007;35(6):1842-58. doi: 10.1093/nar/gkm035. Epub 2007 Mar 1.

Abstract

The protein antizyme is a negative regulator of intracellular polyamine levels. Ribosomes synthesizing antizyme start in one ORF and at the codon 5' adjacent to its stop codon, shift +1 to a second and partially overlapping ORF which encodes most of the protein. The ribosomal frameshifting is a sensor and effector of an autoregulatory circuit which is conserved in animals, fungi and protists. Stimulatory signals encoded 5' and 3' of the shift site act to program the frameshifting. Despite overall conservation, many individual branches have evolved specific features surrounding the frameshift site. Among these are RNA pseudoknots, RNA stem-loops, conserved primary RNA sequences, nascent peptide sequences and branch-specific 'shifty' codons.

摘要

抗酶蛋白是细胞内多胺水平的负调节因子。合成抗酶的核糖体从一个开放阅读框(ORF)开始,在其终止密码子相邻的5'端密码子处,发生+1移码至第二个部分重叠的ORF,该ORF编码大部分蛋白质。核糖体移码是一种自动调节回路的传感器和效应器,在动物、真菌和原生生物中保守。位于移码位点5'端和3'端编码的刺激信号作用于编程移码。尽管总体上具有保守性,但许多独立分支在移码位点周围进化出了特定特征。其中包括RNA假结、RNA茎环、保守的初级RNA序列、新生肽序列和分支特异性的“移码”密码子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a382/1874602/6cf562c51bc3/gkm035f1.jpg

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