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相似文献

1
A simple method for global sequence comparison.一种用于全局序列比较的简单方法。
Nucleic Acids Res. 1992 Jan 11;20(1):131-6. doi: 10.1093/nar/20.1.131.
2
Parametric and inverse-parametric sequence alignment with XPARAL.使用XPARAL进行参数化和逆参数化序列比对。
Methods Enzymol. 1996;266:481-94. doi: 10.1016/s0076-6879(96)66030-3.
3
Identification of cDNA sequences by specific oligonucleotide sets. Computer tool and application.
Proc Int Conf Intell Syst Mol Biol. 1995;3:206-14.
4
[Rapid evaluation of nucleotide sequence homology by frequencies of oligonucleotides].
Dokl Akad Nauk SSSR. 1989;308(5):1232-5.
5
Effective large-scale sequence similarity searches.有效的大规模序列相似性搜索。
Methods Enzymol. 1996;266:212-27. doi: 10.1016/s0076-6879(96)66016-9.
6
Bias in nucleotide composition of antisense oligonucleotides.反义寡核苷酸核苷酸组成中的偏差。
Antisense Nucleic Acid Drug Dev. 1996 Spring;6(1):63-7. doi: 10.1089/oli.1.1996.6.63.
7
[A new PCR-primer for specific amplification of human DNA fragments selected on the basis of computer analysis of the nucleotide sequences of MER1 dispersed repeats in man].[一种基于对人类MER1分散重复序列核苷酸序列进行计算机分析而筛选出的用于特异性扩增人类DNA片段的新型PCR引物]
Genetika. 1997 Feb;33(2):243-8.
8
Sequence alignment by cross-correlation.通过互相关进行序列比对。
J Biomol Tech. 2005 Dec;16(4):453-8.
9
[Plan for finding homologies in nucleotide sequence databases using preliminarily calculated sequence samples].
Mol Biol (Mosk). 1995 Jul-Aug;29(4):790-800.
10
[Novel computerized method for designing nucleotide sequence used for DNA probes and PCR primers].[用于设计DNA探针和PCR引物的核苷酸序列的新型计算机化方法]
Nihon Rinsho. 1994 Feb;52(2):530-41.

本文引用的文献

1
Identification of common molecular subsequences.常见分子子序列的鉴定
J Mol Biol. 1981 Mar 25;147(1):195-7. doi: 10.1016/0022-2836(81)90087-5.
2
Rapid similarity searches of nucleic acid and protein data banks.核酸和蛋白质数据库的快速相似性搜索。
Proc Natl Acad Sci U S A. 1983 Feb;80(3):726-30. doi: 10.1073/pnas.80.3.726.
3
Markov chain analysis finds a significant influence of neighboring bases on the occurrence of a base in eucaryotic nuclear DNA sequences both protein-coding and noncoding.马尔可夫链分析发现，在真核细胞核DNA序列（包括蛋白质编码序列和非编码序列）中，相邻碱基对某一碱基出现的概率有显著影响。
J Mol Evol. 1984;21(3):278-88. doi: 10.1007/BF02102360.
4
ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.ACNUC——一种用于核酸序列数据库的便携式检索系统：逻辑与物理设计及使用方法
Comput Appl Biosci. 1985 Sep;1(3):167-72. doi: 10.1093/bioinformatics/1.3.167.
5
"Homology" controversy.
Science. 1987 Nov 27;238(4831):1217. doi: 10.1126/science.3685969.
6
When does homology mean something else?
Science. 1987 Sep 25;237(4822):1570. doi: 10.1126/science.3629257.
7
"Homology" in proteins and nucleic acids: a terminology muddle and a way out of it.蛋白质和核酸中的“同源性”：术语混乱及解决之道
Cell. 1987 Aug 28;50(5):667. doi: 10.1016/0092-8674(87)90322-9.
8
The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis.密码子使用对大肠杆菌基因组寡核苷酸组成的影响以及通过马尔可夫链分析鉴定过度和低度代表序列。
Nucleic Acids Res. 1987 Mar 25;15(6):2627-38. doi: 10.1093/nar/15.6.2627.
9
A measure of the similarity of sets of sequences not requiring sequence alignment.一种无需序列比对的序列集相似性度量方法。
Proc Natl Acad Sci U S A. 1986 Jul;83(14):5155-9. doi: 10.1073/pnas.83.14.5155.
10
Improved tools for biological sequence comparison.用于生物序列比较的改进工具。
Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444-8. doi: 10.1073/pnas.85.8.2444.

一种用于全局序列比较的简单方法。

A simple method for global sequence comparison.

作者信息

Pizzi E, Attimonelli M, Liuni S, Frontali C, Saccone C

机构信息

Centro Studi Mitocondri e Metabolismo Energetico CNR, Dipartimento di Biochimica e Biologia Molecolare, University of Bari, Italy.

出版信息

Nucleic Acids Res. 1992 Jan 11;20(1):131-6. doi: 10.1093/nar/20.1.131.

DOI:10.1093/nar/20.1.131
PMID:1738591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC310336/
Abstract

A simple method of sequence comparison, based on a correlation analysis of oligonucleotide frequency distributions, is here shown to be a reliable test of overall sequence similarity. The method does not involve sequence alignment procedures and permits the rapid screening of large amounts of sequence data. It identifies those sequences which deserve more careful analysis of sequence similarity at the level of resolution of the single nucleotide. It uses observed quantities only and does not involve the adoption of any theoretical model.

摘要

一种基于寡核苷酸频率分布相关性分析的简单序列比较方法，被证明是一种可靠的整体序列相似性测试方法。该方法不涉及序列比对程序，可快速筛选大量序列数据。它能识别出那些值得在单核苷酸分辨率水平上更仔细分析序列相似性的序列。它仅使用观测值，不涉及任何理论模型的采用。