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使用“自然”力场解释环糊精与霉菌毒素的相互作用。

Explaining cyclodextrin-mycotoxin interactions using a 'natural' force field.

作者信息

Amadasi Alessio, Dall'asta Chiara, Ingletto Gianluigi, Pela Roberto, Marchelli Rosangela, Cozzini Pietro

机构信息

Department of Biochemistry and Molecular Biology, University of Parma, I-43100 Parma, Italy.

出版信息

Bioorg Med Chem. 2007 Jul 1;15(13):4585-94. doi: 10.1016/j.bmc.2007.04.006. Epub 2007 Apr 10.

Abstract

Docking techniques and the HINT (Hydropathic Interaction) program were used to explain interactions of aflatoxin B(1) and ochratoxin A with beta- and gamma-cyclodextrins. The work was aimed at designing a chemosensor to identify very low concentrations of these mycotoxins by exploiting the affinity of the cyclodextrin cavity for many small organic molecules. Actually, the inclusion of the fluorescent portion of these toxins into the cavity may lower the quenching effect of the solvent, thus enhancing the luminescence. HINT is a 'natural' force field, based on experimentally determined LogP(octanol/water) values, that is able to consider both enthalpic and entropic contributions to the binding free energy with an unified approach. HINT is normally applied to predict the DeltaG degrees of binding for protein-ligand, protein-protein, and protein-DNA interactions. The leading forces in biomolecular processes are the same as those involved in organic host-guest inclusion phenomena, therefore we applied this methodology for the first time to cyclodextrin complexes. The results allowed us to explain spectroscopic data in absence of available crystallographic or NMR structural data.

摘要

对接技术和HINT(亲水性相互作用)程序被用于解释黄曲霉毒素B(1)和赭曲霉毒素A与β-和γ-环糊精的相互作用。这项工作旨在设计一种化学传感器,通过利用环糊精空腔对许多小分子有机化合物的亲和力来识别极低浓度的这些霉菌毒素。实际上,将这些毒素的荧光部分包合到空腔中可能会降低溶剂的猝灭效应,从而增强发光。HINT是一种基于实验测定的LogP(正辛醇/水)值的“天然”力场,它能够用统一的方法考虑对结合自由能的焓和熵的贡献。HINT通常用于预测蛋白质-配体、蛋白质-蛋白质和蛋白质-DNA相互作用的结合ΔG°。生物分子过程中的主导力与有机主体-客体包合现象中涉及的力相同,因此我们首次将这种方法应用于环糊精复合物。这些结果使我们能够在没有可用的晶体学或核磁共振结构数据的情况下解释光谱数据。

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