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遵循进化的指引,实现二萜合酶产物结果的单残基转换。

Following evolution's lead to a single residue switch for diterpene synthase product outcome.

作者信息

Xu Meimei, Wilderman P Ross, Peters Reuben J

机构信息

Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7397-401. doi: 10.1073/pnas.0611454104. Epub 2007 Apr 24.

DOI:10.1073/pnas.0611454104
PMID:17456599
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1855280/
Abstract

There have been few insights into the biochemical origins of natural product biosynthesis from primary metabolism. Of particular interest are terpene synthases, which often mediate the committed step in particular biosynthetic pathways so that alteration of their product outcome is a key step in the derivation of novel natural products. These enzymes also catalyze complex reactions of significant mechanistic interest. Following an evolutionary lead from two recently diverged, functionally distinct diterpene synthase orthologs from different subspecies of rice, we have identified a single residue that can switch product outcome. Specifically, the mutation of a conserved isoleucine to threonine that acts to convert not only the originally targeted isokaurene synthase into a specific pimaradiene synthase but also has a much broader effect, which includes conversion of the ent-kaurene synthases found in all higher plants for gibberellin phytohormone biosynthesis to the production of pimaradiene. This surprisingly facile switch for diterpene synthase catalytic specificity indicates the ease with which primary (gibberellin) metabolism can be subverted to secondary biosynthesis and may underlie the widespread occurrence of pimaradiene-derived natural products. In addition, because this isoleucine is required for the mechanistically more complex cyclization to tetracyclic kaurene, whereas substitution with threonine "short-circuits" this mechanism to produce the "simpler" tricyclic pimaradiene, our results have some implications regarding the means by which terpene synthases specify product outcome.

摘要

关于天然产物生物合成从初级代谢的生化起源,人们了解甚少。特别值得关注的是萜烯合酶,它们常常介导特定生物合成途径中的关键步骤,因此改变其产物结果是新型天然产物衍生过程中的关键一步。这些酶还催化具有重要机制研究价值的复杂反应。沿着来自水稻不同亚种的两个最近分化、功能不同的二萜合酶直系同源物的进化线索,我们鉴定出了一个能够改变产物结果的单一残基。具体而言,将一个保守的异亮氨酸突变为苏氨酸,这不仅能将原本靶向的异贝壳杉烯合酶转化为特定的海松二烯合酶,而且具有更广泛的影响,包括将所有高等植物中用于赤霉素植物激素生物合成的内贝壳杉烯合酶转化为海松二烯的产生。二萜合酶催化特异性这种出人意料的简单转变表明,初级(赤霉素)代谢可以很容易地转向次级生物合成,这可能是海松二烯衍生的天然产物广泛存在的基础。此外,由于这个异亮氨酸对于机制上更复杂的四环贝壳杉烯环化是必需的,而用苏氨酸替代会“短路”该机制以产生“更简单”的三环海松二烯,我们的结果对于萜烯合酶确定产物结果的方式具有一定启示。

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1
A modular approach for facile biosynthesis of labdane-related diterpenes.一种用于轻松生物合成半日花烷型二萜的模块化方法。
J Am Chem Soc. 2007 May 30;129(21):6684-5. doi: 10.1021/ja071158n. Epub 2007 May 5.
2
Probing the role of the DXDD motif in Class II diterpene cyclases.探究DXDD基序在II类二萜环化酶中的作用。
Chembiochem. 2007 May 25;8(8):869-74. doi: 10.1002/cbic.200700045.
3
Functional characterization of the rice kaurene synthase-like gene family.水稻贝壳杉烯合酶类似基因家族的功能特性分析
Phytochemistry. 2007 Feb;68(3):312-26. doi: 10.1016/j.phytochem.2006.10.016. Epub 2006 Dec 1.
4
Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants.揭示水稻和其他谷类作物中二萜类植保素生物合成背后的复杂代谢网络。
Phytochemistry. 2006 Nov;67(21):2307-17. doi: 10.1016/j.phytochem.2006.08.009. Epub 2006 Sep 7.
5
Structural biology and chemistry of the terpenoid cyclases.萜类环化酶的结构生物学与化学
Chem Rev. 2006 Aug;106(8):3412-42. doi: 10.1021/cr050286w.
6
Characterization of a rice gene family encoding type-A diterpene cyclases.一个编码 A 型二萜环化酶的水稻基因家族的特征分析
Biosci Biotechnol Biochem. 2006 Jul;70(7):1702-10. doi: 10.1271/bbb.60044.
7
Identifying and manipulating structural determinates linking catalytic specificities in terpene synthases.鉴定和操控连接萜烯合酶催化特异性的结构决定因素。
Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9826-31. doi: 10.1073/pnas.0601605103. Epub 2006 Jun 19.
8
Designed divergent evolution of enzyme function.设计酶功能的趋异进化。
Nature. 2006 Apr 20;440(7087):1078-82. doi: 10.1038/nature04607. Epub 2006 Feb 22.
9
The variability of sesquiterpenes emitted from two Zea mays cultivars is controlled by allelic variation of two terpene synthase genes encoding stereoselective multiple product enzymes.两个玉米品种释放的倍半萜烯的变异性受两个编码立体选择性多产物酶的萜烯合酶基因的等位变异控制。
Plant Cell. 2004 May;16(5):1115-31. doi: 10.1105/tpc.019877. Epub 2004 Apr 9.
10
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids.在大肠杆菌中构建甲羟戊酸途径以生产萜类化合物。
Nat Biotechnol. 2003 Jul;21(7):796-802. doi: 10.1038/nbt833. Epub 2003 Jun 1.