• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于氨基酸序列相似性的糖基水解酶分类

A classification of glycosyl hydrolases based on amino acid sequence similarities.

作者信息

Henrissat B

机构信息

Centre de Recherches sur les Macromolécules Végétales, C.N.R.S., Grenoble, France.

出版信息

Biochem J. 1991 Dec 1;280 ( Pt 2)(Pt 2):309-16. doi: 10.1042/bj2800309.

DOI:10.1042/bj2800309
PMID:1747104
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1130547/
Abstract

The amino acid sequences of 301 glycosyl hydrolases and related enzymes have been compared. A total of 291 sequences corresponding to 39 EC entries could be classified into 35 families. Only ten sequences (less than 5% of the sample) could not be assigned to any family. With the sequences available for this analysis, 18 families were found to be monospecific (containing only one EC number) and 17 were found to be polyspecific (containing at least two EC numbers). Implications on the folding characteristics and mechanism of action of these enzymes and on the evolution of carbohydrate metabolism are discussed. With the steady increase in sequence and structural data, it is suggested that the enzyme classification system should perhaps be revised.

摘要

已对301种糖基水解酶及相关酶的氨基酸序列进行了比较。对应于39个酶委员会(EC)条目的总共291个序列可被分为35个家族。只有10个序列(占样本不到5%)无法归入任何家族。利用可用于此分析的序列,发现18个家族是单特异性的(仅包含一个EC编号),17个家族是多特异性的(包含至少两个EC编号)。讨论了这些酶的折叠特征、作用机制以及碳水化合物代谢进化方面的影响。随着序列和结构数据的不断增加,有人建议或许应该修订酶分类系统。

相似文献

1
A classification of glycosyl hydrolases based on amino acid sequence similarities.基于氨基酸序列相似性的糖基水解酶分类
Biochem J. 1991 Dec 1;280 ( Pt 2)(Pt 2):309-16. doi: 10.1042/bj2800309.
2
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.基于氨基酸序列相似性的糖基水解酶分类中的新家族。
Biochem J. 1993 Aug 1;293 ( Pt 3)(Pt 3):781-8. doi: 10.1042/bj2930781.
3
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.保守的催化机制以及几个糖基水解酶家族共同折叠结构的预测。
Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):7090-4. doi: 10.1073/pnas.92.15.7090.
4
Structural and sequence-based classification of glycoside hydrolases.糖苷水解酶基于结构和序列的分类
Curr Opin Struct Biol. 1997 Oct;7(5):637-44. doi: 10.1016/s0959-440x(97)80072-3.
5
A common molecular signature unifies the chitosanases belonging to families 46 and 80 of glycoside hydrolases.一种常见的分子特征统一了糖苷水解酶家族46和80中的壳聚糖酶。
Can J Microbiol. 2000 Oct;46(10):952-5.
6
Updating the sequence-based classification of glycosyl hydrolases.更新基于序列的糖基水解酶分类
Biochem J. 1996 Jun 1;316 ( Pt 2)(Pt 2):695-6. doi: 10.1042/bj3160695.
7
Nucleotide sequence of arfB of Clostridium stercorarium, and prediction of catalytic residues of alpha-L-arabinofuranosidases based on local similarity with several families of glycosyl hydrolases.粪堆梭菌arfB的核苷酸序列,以及基于与几个糖基水解酶家族的局部相似性对α-L-阿拉伯呋喃糖苷酶催化残基的预测。
FEMS Microbiol Lett. 1998 Jul 15;164(2):337-43. doi: 10.1111/j.1574-6968.1998.tb13107.x.
8
Molecular modeling of family GH16 glycoside hydrolases: potential roles for xyloglucan transglucosylases/hydrolases in cell wall modification in the poaceae.GH16家族糖苷水解酶的分子建模:木葡聚糖转葡糖基酶/水解酶在禾本科细胞壁修饰中的潜在作用
Protein Sci. 2004 Dec;13(12):3200-13. doi: 10.1110/ps.04828404.
9
Hierarchical classification of glycoside hydrolases.糖苷水解酶的层次分类。
Biochemistry (Mosc). 2011 Jun;76(6):622-35. doi: 10.1134/S0006297911060022.
10
Nucleotide and deduced amino acid sequences of mutanase-like genes from Paenibacillus isolates: proposal of a new family of glycoside hydrolases.来自芽孢杆菌属分离株的类变聚糖酶基因的核苷酸和推导的氨基酸序列:糖苷水解酶新家族的提议
Biochimie. 2008 Mar;90(3):525-33. doi: 10.1016/j.biochi.2007.09.018. Epub 2007 Sep 29.

引用本文的文献

1
Evaluation of De Novo Deep Learning Models on the Protein-Sugar Interactome.蛋白质-糖相互作用组上新深度学习模型的评估
bioRxiv. 2025 Sep 6:2025.09.02.673778. doi: 10.1101/2025.09.02.673778.
2
Identification of Candidate Genes Related to the Husk Papillae in Foxtail Millet ( (L.) P. Beauv).谷子(Setaria italica (L.) P. Beauv.)颖壳乳头相关候选基因的鉴定
Plants (Basel). 2025 Aug 14;14(16):2535. doi: 10.3390/plants14162535.
3
Characterization and Expression Analysis of β-Glucosidase Gene Under Abiotic Stresses in Pepper ( L.).辣椒(L.)非生物胁迫下β-葡萄糖苷酶基因的鉴定与表达分析
Genes (Basel). 2025 Jul 27;16(8):889. doi: 10.3390/genes16080889.
4
Pseudomonas bambusae sp.nov., an Aniline Blue-Decolorizing Bacterium Isolated from Decaying Round Bamboo Culms.竹假单胞菌新种,一种从腐烂的圆形竹茎中分离出的能使苯胺蓝脱色的细菌。
Curr Microbiol. 2025 Aug 14;82(10):454. doi: 10.1007/s00284-025-04442-4.
5
Microbial dark matter spearheading the biogeochemical cycle in the Solar Lake of Taba, Egypt.微生物暗物质引领着埃及塔巴太阳湖的生物地球化学循环。
Curr Res Microb Sci. 2025 Jul 1;9:100433. doi: 10.1016/j.crmicr.2025.100433. eCollection 2025.
6
Chitinase-3-Like Protein 1 as a Therapeutic Target for Inflammatory Diseases.几丁质酶-3样蛋白1作为炎症性疾病的治疗靶点
Biomol Ther (Seoul). 2025 Sep 1;33(5):747-757. doi: 10.4062/biomolther.2025.050. Epub 2025 Aug 7.
7
Structural basis of transglucosylation in dextran dextrinase, a homolog of anomer-inverting GH15 glucoside hydrolases.葡聚糖糊精酶中转糖基化的结构基础,一种异头构型翻转的GH15糖苷水解酶的同源物。
J Biol Chem. 2025 Jul 30;301(9):110541. doi: 10.1016/j.jbc.2025.110541.
8
Cellulose synthase machinery in thickened primary cell walls of celery collenchyma via prizm of transcriptome analysis.通过转录组分析棱镜研究芹菜厚角组织加厚初生细胞壁中的纤维素合酶机制。
J Plant Res. 2025 Sep;138(5):887-903. doi: 10.1007/s10265-025-01662-4. Epub 2025 Jul 31.
9
Hyaluronidase: structure, mechanism of action, diseases and therapeutic targets.透明质酸酶:结构、作用机制、疾病及治疗靶点
Mol Biomed. 2025 Jul 12;6(1):50. doi: 10.1186/s43556-025-00299-y.
10
Division of the large and multifunctional glycoside hydrolase family 2: high functional specificity and biochemical assays in the uncharacterized subfamilies.大型多功能糖苷水解酶家族2的分类:未表征亚家族中的高功能特异性及生化分析
Biotechnol Biofuels Bioprod. 2025 Jul 9;18(1):68. doi: 10.1186/s13068-025-02669-8.

本文引用的文献

1
Sequence analysis and comparison of avocado fruit and bean abscission cellulases.鳄梨果实和豆科植物脱落纤维素酶的序列分析与比较。
Plant Physiol. 1991 Mar;95(3):928-33. doi: 10.1104/pp.95.3.928.
2
Isolation and Characterization of the Genes Encoding Basic and Acidic Chitinase in Arabidopsis thaliana.拟南芥碱性和酸性几丁质酶基因的分离与鉴定。
Plant Physiol. 1990 Jul;93(3):907-14. doi: 10.1104/pp.93.3.907.
3
ISOLATED INTESTINAL LACTASE DEFICIENCY IN THE ADULT.成人孤立性肠乳糖酶缺乏症
Lancet. 1963 Aug 17;2(7303):324-6. doi: 10.1016/s0140-6736(63)92991-x.
4
An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.一个用于比较和比对核酸及氨基酸序列的交互式图形程序。
Nucleic Acids Res. 1982 May 11;10(9):2951-61. doi: 10.1093/nar/10.9.2951.
5
A general method applicable to the search for similarities in the amino acid sequence of two proteins.一种适用于寻找两种蛋白质氨基酸序列相似性的通用方法。
J Mol Biol. 1970 Mar;48(3):443-53. doi: 10.1016/0022-2836(70)90057-4.
6
The relation between the divergence of sequence and structure in proteins.蛋白质中序列与结构的差异关系。
EMBO J. 1986 Apr;5(4):823-6. doi: 10.1002/j.1460-2075.1986.tb04288.x.
7
Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences.疏水簇分析:一种比较和分析氨基酸序列的有效新方法。
FEBS Lett. 1987 Nov 16;224(1):149-55. doi: 10.1016/0014-5793(87)80439-8.
8
Nucleotide sequence of the alpha-amylase gene (ALP1) in the yeast Saccharomycopsis fibuligera.
FEBS Lett. 1987 Jul 27;219(2):339-42. doi: 10.1016/0014-5793(87)80248-x.
9
EGIII, a new endoglucanase from Trichoderma reesei: the characterization of both gene and enzyme.来自里氏木霉的新型内切葡聚糖酶EGIII:基因与酶的特性研究
Gene. 1988;63(1):11-22. doi: 10.1016/0378-1119(88)90541-0.
10
Nucleotide sequence of the maltohexaose-producing amylase gene from an alkalophilic Bacillus sp. #707 and structural similarity to liquefying type alpha-amylases.嗜碱芽孢杆菌#707中产生麦芽六糖淀粉酶基因的核苷酸序列及其与液化型α-淀粉酶的结构相似性
Biochem Biophys Res Commun. 1988 Feb 29;151(1):25-31. doi: 10.1016/0006-291x(88)90554-2.