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基于氨基酸序列相似性的糖基水解酶分类中的新家族。

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

作者信息

Henrissat B, Bairoch A

机构信息

Centre de Recherches sur les Macromolécules Végétales, C.N.R.S., Grenoble, France.

出版信息

Biochem J. 1993 Aug 1;293 ( Pt 3)(Pt 3):781-8. doi: 10.1042/bj2930781.

Abstract

301 glycosyl hydrolases and related enzymes corresponding to 39 EC entries of the I.U.B. classification system have been classified into 35 families on the basis of amino-acid-sequence similarities [Henrissat (1991) Biochem. J. 280, 309-316]. Approximately half of the families were found to be monospecific (containing only one EC number), whereas the other half were found to be polyspecific (containing at least two EC numbers). A > 60% increase in sequence data for glycosyl hydrolases (181 additional enzymes or enzyme domains sequences have since become available) allowed us to update the classification not only by the addition of more members to already identified families, but also by the finding of ten new families. On the basis of a comparison of 482 sequences corresponding to 52 EC entries, 45 families, out of which 22 are polyspecific, can now be defined. This classification has been implemented in the SWISS-PROT protein sequence data bank.

摘要

根据国际生物化学与分子生物学联盟(I.U.B.)分类系统的39个酶委员会(EC)条目,301种糖基水解酶及相关酶已依据氨基酸序列相似性被分为35个家族[亨里萨特(1991年)《生物化学杂志》280卷,309 - 316页]。发现大约一半的家族是单特异性的(仅包含一个EC编号),而另一半是多特异性的(包含至少两个EC编号)。糖基水解酶序列数据增加了60%以上(此后又有181个额外的酶或酶结构域序列可用),这使我们不仅能够通过为已确定的家族添加更多成员来更新分类,还能发现十个新家族。基于对对应52个EC条目的482个序列的比较,现在可以定义45个家族,其中22个是多特异性的。这种分类已在SWISS - PROT蛋白质序列数据库中实施。

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