• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

家牛群体扩张的贝叶斯推断

Bayesian inference of population expansions in domestic bovines.

作者信息

Finlay E K, Gaillard C, Vahidi S M F, Mirhoseini S Z, Jianlin H, Qi X B, El-Barody M A A, Baird J F, Healy B C, Bradley D G

机构信息

Smurfit Institute of Genetics, Trinity College, Dublin 2, Ireland.

出版信息

Biol Lett. 2007 Aug 22;3(4):449-52. doi: 10.1098/rsbl.2007.0146.

DOI:10.1098/rsbl.2007.0146
PMID:17535790
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2111054/
Abstract

The past population dynamics of four domestic and one wild species of bovine were estimated using Bayesian skyline plots, a coalescent Markov chain Monte Carlo method that does not require an assumed parametric model of demographic history. Four domestic species share a recent rapid population expansion not visible in the wild African buffalo (Syncerus caffer). The estimated timings of the expansions are consistent with the archaeological records of domestication.

摘要

利用贝叶斯天际线图估计了四种家养牛和一种野生牛的过去种群动态,这是一种不要求假定人口历史参数模型的合并马尔可夫链蒙特卡罗方法。四种家养牛都经历了近期的快速种群扩张,而野生非洲水牛(非洲水牛属)则没有这种情况。估计的扩张时间与驯化的考古记录一致。

相似文献

1
Bayesian inference of population expansions in domestic bovines.家牛群体扩张的贝叶斯推断
Biol Lett. 2007 Aug 22;3(4):449-52. doi: 10.1098/rsbl.2007.0146.
2
Bayesian coalescent inference of past population dynamics from molecular sequences.基于分子序列的贝叶斯溯祖推断过去种群动态
Mol Biol Evol. 2005 May;22(5):1185-92. doi: 10.1093/molbev/msi103. Epub 2005 Feb 9.
3
Worldwide phylogeography of wild boar reveals multiple centers of pig domestication.野猪的全球系统发育地理学揭示了猪驯化的多个中心。
Science. 2005 Mar 11;307(5715):1618-21. doi: 10.1126/science.1106927.
4
Mid-Holocene decline in African buffalos inferred from Bayesian coalescent-based analyses of microsatellites and mitochondrial DNA.基于贝叶斯合并分析微卫星和线粒体DNA推断全新世中期非洲水牛数量下降
Mol Ecol. 2008 Nov;17(22):4845-58. doi: 10.1111/j.1365-294X.2008.03961.x.
5
Phylogeography of the longhorn cactus beetle Moneilema appressum LeConte (Coleoptera: Cerambycidae): was the differentiation of the Madrean sky islands driven by Pleistocene climate changes?长角仙人掌甲虫Moneilema appressum LeConte(鞘翅目:天牛科)的系统发育地理学:马德雷天空岛的分化是由更新世气候变化驱动的吗?
Mol Ecol. 2005 Sep;14(10):3049-65. doi: 10.1111/j.1365-294X.2005.02647.x.
6
Comparative phylogeography of five avian species: implications for Pleistocene evolutionary history in the Qinghai-Tibetan plateau.五种鸟类物种的比较系统地理学:对青藏高原更新世进化历史的启示。
Mol Ecol. 2010 Jan;19(2):338-51. doi: 10.1111/j.1365-294X.2009.04445.x. Epub 2009 Dec 3.
7
New findings regarding the epidemic history and population dynamics of Japan-indigenous genotype 3 hepatitis E virus inferred by molecular evolution.分子进化推断的日本本土基因型 3 型肝炎病毒的流行史和种群动态的新发现。
Liver Int. 2012 Apr;32(4):675-88. doi: 10.1111/j.1478-3231.2011.02728.x. Epub 2011 Dec 18.
8
Problems and Cautions With Sequence Mismatch Analysis and Bayesian Skyline Plots to Infer Historical Demography.用于推断历史种群动态的序列错配分析和贝叶斯天际线图的问题与注意事项
J Hered. 2015 Jul-Aug;106(4):333-46. doi: 10.1093/jhered/esv020. Epub 2015 Apr 29.
9
Mitochondrial DNA analysis reveals a new member of the Asian pitviper genus Viridovipera (Serpentes: Viperidae: Crotalinae).线粒体DNA分析揭示了亚洲蝮属(学名:绿蝮属,Serpentes目:蝰蛇科:蝮亚科)的一个新成员。
Mol Phylogenet Evol. 2008 Oct;49(1):356-61. doi: 10.1016/j.ympev.2008.05.044. Epub 2008 Jun 7.
10
Bayesian skyline plot inference of the Toscana virus epidemic: a decline in the effective number of infections over the last 30 years.
Infect Genet Evol. 2009 Jul;9(4):562-6. doi: 10.1016/j.meegid.2009.02.007. Epub 2009 Feb 27.

引用本文的文献

1
Whole-Genome Sequencing and Characterization of Buffalo Genetic Resources: Recent Advances and Future Challenges.水牛遗传资源的全基因组测序与特征分析:最新进展与未来挑战
Animals (Basel). 2021 Mar 22;11(3):904. doi: 10.3390/ani11030904.
2
High diversity, inbreeding and a dynamic Pleistocene demographic history revealed by African buffalo genomes.非洲野牛基因组揭示了其高度的多样性、近亲繁殖以及更新世动态的种群历史。
Sci Rep. 2021 Feb 25;11(1):4540. doi: 10.1038/s41598-021-83823-8.
3
Cattle mitogenome variation reveals a post-glacial expansion of haplogroup P and an early incorporation into northeast Asian domestic herds.

本文引用的文献

1
Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs.线粒体DNA分析表明,家养牛起源于近东新石器时代,没有迹象显示欧洲原牛被驯化。
Proc Biol Sci. 2007 Jun 7;274(1616):1377-85. doi: 10.1098/rspb.2007.0020.
2
Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication.欧洲猪和中国猪的线粒体多样性与驯化前发生的种群扩张相一致。
Proc Biol Sci. 2006 Jul 22;273(1595):1803-10. doi: 10.1098/rspb.2006.3514.
3
Bayesian coalescent inference of past population dynamics from molecular sequences.
牛线粒体基因组变异揭示了 P 单倍群在冰期后的扩张以及其早期融入东北亚家牛群体。
Sci Rep. 2020 Nov 30;10(1):20842. doi: 10.1038/s41598-020-78040-8.
4
Demographic expansion of an African opportunistic carnivore during the Neolithic revolution.新石器革命时期非洲机会主义食肉动物的种群扩张。
Biol Lett. 2020 Jan;16(1):20190560. doi: 10.1098/rsbl.2019.0560. Epub 2020 Jan 22.
5
Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses.通过比较系统地理学和种群统计学分析推断地中海底层鲨鱼和鳐鱼的自然史与分子进化
PeerJ. 2018 Sep 18;6:e5560. doi: 10.7717/peerj.5560. eCollection 2018.
6
The mtDNA haplogroup P of modern Asian cattle: A genetic legacy of Asian aurochs?现代亚洲牛的线粒体DNA单倍群P:亚洲原牛的遗传遗产?
PLoS One. 2018 Jan 5;13(1):e0190937. doi: 10.1371/journal.pone.0190937. eCollection 2018.
7
Whole Mitogenomes Reveal the History of Swamp Buffalo: Initially Shaped by Glacial Periods and Eventually Modelled by Domestication.全基因组揭示了沼泽水牛的历史:最初由冰川期塑造,最终由驯化塑造。
Sci Rep. 2017 Jul 5;7(1):4708. doi: 10.1038/s41598-017-04830-2.
8
Mitochondrial DNA variation, genetic structure and demographic history of Iranian populations.伊朗人群的线粒体DNA变异、遗传结构和人口历史
Mol Biol Res Commun. 2014 Mar;3(1):45-65.
9
Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.理解过去的种群动态:基于贝叶斯合并的协变量建模
Syst Biol. 2016 Nov;65(6):1041-1056. doi: 10.1093/sysbio/syw050. Epub 2016 Jul 1.
10
Demographic History of Indigenous Populations in Mesoamerica Based on mtDNA Sequence Data.基于线粒体DNA序列数据的中美洲原住民人口统计学历史
PLoS One. 2015 Aug 20;10(8):e0131791. doi: 10.1371/journal.pone.0131791. eCollection 2015.
基于分子序列的贝叶斯溯祖推断过去种群动态
Mol Biol Evol. 2005 May;22(5):1185-92. doi: 10.1093/molbev/msi103. Epub 2005 Feb 9.
4
Rise and fall of the Beringian steppe bison.白令海峡草原野牛的兴衰
Science. 2004 Nov 26;306(5701):1561-5. doi: 10.1126/science.1101074.
5
Analysis of mitochondrial D-loop region casts new light on domestic water buffalo (Bubalus bubalis) phylogeny.线粒体D环区域分析为家水牛(Bubalus bubalis)系统发育研究带来新线索。
Mol Phylogenet Evol. 2004 Feb;30(2):308-24. doi: 10.1016/s1055-7903(03)00221-5.
6
DNA markers reveal the complexity of livestock domestication.DNA标记揭示了家畜驯化的复杂性。
Nat Rev Genet. 2003 Nov;4(11):900-10. doi: 10.1038/nrg1203.
7
African pastoralism: genetic imprints of origins and migrations.非洲游牧业:起源与迁徙的基因印记
Science. 2002 Apr 12;296(5566):336-9. doi: 10.1126/science.1069878.
8
Phylogeography of the African buffalo based on mitochondrial and Y-chromosomal loci: Pleistocene origin and population expansion of the Cape buffalo subspecies.基于线粒体和Y染色体基因座的非洲水牛系统地理学:开普水牛亚种的更新世起源和种群扩张
Mol Ecol. 2002 Feb;11(2):267-79. doi: 10.1046/j.1365-294x.2002.01429.x.
9
Livestock genetic origins: goats buck the trend.家畜的遗传起源:山羊逆势而行。
Proc Natl Acad Sci U S A. 2001 May 8;98(10):5382-4. doi: 10.1073/pnas.111163198.
10
Genetic evidence for Near-Eastern origins of European cattle.欧洲牛起源于近东地区的遗传学证据。
Nature. 2001 Apr 26;410(6832):1088-91. doi: 10.1038/35074088.