Yoon Jaewoo, Matsuo Yoshihide, Matsuda Satoru, Adachi Kyoko, Kasai Hiroaki, Yokota Akira
Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-Ku, Tokyo 113-0032, Japan.
Marine Biotechnology Institute Co. Ltd, 3-75-1, Heita, Kamaishi, Iwate 026-0001, Japan.
Int J Syst Evol Microbiol. 2007 Oct;57(Pt 10):2337-2343. doi: 10.1099/ijs.0.65243-0.
Two Gram-negative, non-motile, coccoid or rod-shaped, chemoheterotrophic bacteria designated strains YM21-132(T) and YM27-005(T) were isolated from marine animals, and were subjected to a polyphasic taxonomic examination. Phylogenetic analyses based on 16S rRNA gene sequences indicated that the two isolates belong to the genus Rubritalea of the phylum 'Verrucomicrobia' (subdivision 1). The novel isolates shared approximately 97-98 % sequence similarity with each other and showed 93-97 % similarity with Rubritalea species of the family Verrucomicrobiaceae. The level of DNA-DNA relatedness between strains YM21-132(T) and YM27-005(T) was less than 70 %, which is accepted as the phylogenetic definition of a species. Both strains produced reddish carotenoid pigments and squalene. The cell wall peptidoglycan of both strains contained muramic acid and meso-diaminopimelic acid. The G+C contents of the genomic DNA were 48.0 mol% (strain YM21-132(T)) and 50.3 mol% (strain YM27-005(T)). The presence of MK-8 and MK-9 as the major isoprenoid quinones, and iso-C(14 : 0), iso-C(16 : 0) and C(16 : 1)omega7c as the major cellular fatty acids supported the identification of the two novel strains as members of the genus Rubritalea. On the basis of polyphasic taxonomic studies, it was concluded that these strains should be classified as representing two novel, separate species in the genus Rubritalea within the phylum 'Verrucomicrobia', for which the names Rubritalea spongiae sp. nov. (type strain YM21-132(T)=MBIC08281(T)=KCTC 12906(T)) and Rubritalea tangerina sp. nov. (type strain YM27-005(T)=MBIC08282(T)=KCTC 12907(T)) are proposed.
从海洋动物中分离出两株革兰氏阴性、无运动性、球状或杆状的化能异养细菌,分别命名为YM21-132(T)和YM27-005(T),并对其进行了多相分类学研究。基于16S rRNA基因序列的系统发育分析表明,这两株分离物属于“疣微菌门”(第1亚群)的红育菌属。这两株新分离物彼此之间的序列相似性约为97-98%,与疣微菌科红育菌属的物种显示出93-97%的相似性。菌株YM21-132(T)和YM27-005(T)之间的DNA-DNA相关性水平低于70%,这被认为是一个物种的系统发育定义。两株菌均产生红色类胡萝卜素色素和角鲨烯。两株菌的细胞壁肽聚糖均含有胞壁酸和内消旋二氨基庚二酸。基因组DNA的G+C含量分别为48.0 mol%(菌株YM21-132(T))和50.3 mol%(菌株YM27-005(T))。以MK-8和MK-9作为主要类异戊二烯醌,以及以异-C(14 : 0)、异-C(16 : 0)和C(16 : 1)ω7c作为主要细胞脂肪酸,支持将这两株新菌株鉴定为红育菌属的成员。基于多相分类学研究,得出结论认为,这些菌株应被归类为代表“疣微菌门”中红育菌属的两个新的、独立的物种,为此提出了海绵红育菌(Rubritalea spongiae sp. nov.)(模式菌株YM21-132(T)=MBIC08281(T)=KCTC 12906(T))和橘红育菌(Rubritalea tangerina sp. nov.)(模式菌株YM27-005(T)=MBIC08282(T)=KCTC 12907(T))这两个名称。