Nisbet Alasdair J, Redmond Diane L, Matthews Jacqui B, Watkins Craig, Yaga Raja, Jones John T, Nath Mintu, Knox David P
Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
Int J Parasitol. 2008 Jun;38(7):829-38. doi: 10.1016/j.ijpara.2007.10.016. Epub 2007 Nov 6.
Suppression subtractive hybridisation was used to enrich genes expressed in a stage-specific manner in infective, exsheathed L3s (xL3) versus early L4s of the ovine nematode, Teladorsagia circumcincta prior to gene expression profiling by microarray. The 769 cDNA sequences obtained from the xL3-enriched library contained 361 unique sequences, with 292 expressed sequence tags (ESTs) being represented once ("singletons") and 69 sequences which were represented more than once (overlapping and non-overlapping "contigs"). The L4-enriched EST dataset contained 472 unique sequences, with 314 singletons and 158 contigs. Of these 833 sequences, 85% of the xL3 sequences and 86% of the L4 sequences exhibited homology to known genes or ESTs derived from other species of nematode. Quantitative differential expression (P<0.05) was demonstrated for 563 (68%) of the ESTs by microarray. Within the L3-specific dataset, more than 30% of the transcripts represented the enzyme, guanosine-5'-triphosphate (GTP)-cyclohydrolase, which is the first and rate-limiting enzyme of the tetrahydrobiopterin synthesis pathway and may be involved in critical elements of larval development. In L4s, proteolytic enzymes were highly up-regulated, as were collagens and a number of previously characterised secretory proteins, reflecting the rapid growth of these larvae in abomasal glands. Nucleotide sequence data reported in this paper are available in the EMBL, GenBank and DDJB databases under accession numbers AM 743198-AM 744942.
在通过微阵列进行基因表达谱分析之前,采用抑制性消减杂交技术富集在绵羊线虫环纹泰勒虫感染性脱鞘第三期幼虫(xL3)与早期第四期幼虫中以阶段特异性方式表达的基因。从xL3富集文库中获得的769个cDNA序列包含361个独特序列,其中292个表达序列标签(EST)仅出现一次(“单拷贝序列”),69个序列出现不止一次(重叠和非重叠的“重叠群”)。L4富集的EST数据集包含472个独特序列,其中314个单拷贝序列和158个重叠群。在这833个序列中,85%的xL3序列和86%的L4序列与源自其他线虫物种的已知基因或EST具有同源性。通过微阵列证明563个(68%)EST存在定量差异表达(P<0.05)。在L3特异性数据集中,超过30%的转录本代表酶鸟苷-5'-三磷酸(GTP)-环水解酶,它是四氢生物蝶呤合成途径的第一个限速酶,可能参与幼虫发育的关键环节。在L4中,蛋白水解酶高度上调,胶原蛋白和一些先前已鉴定的分泌蛋白也是如此,这反映了这些幼虫在皱胃腺中的快速生长。本文报道的核苷酸序列数据可在EMBL、GenBank和DDJB数据库中获取,登录号为AM 743198 - AM 744942。