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古菌甲烷营养菌的生理学和分布:其将甲烷的厌氧氧化与硫酸盐还原相偶联。

Physiology and Distribution of Archaeal Methanotrophs That Couple Anaerobic Oxidation of Methane with Sulfate Reduction.

机构信息

UNESCO-IHE, Institute for Water Education, Delft, The Netherlands.

UNESCO-IHE, Institute for Water Education, Delft, The Netherlands

出版信息

Microbiol Mol Biol Rev. 2019 Jul 31;83(3). doi: 10.1128/MMBR.00074-18. Print 2019 Aug 21.

Abstract

In marine anaerobic environments, methane is oxidized where sulfate-rich seawater meets biogenic or thermogenic methane. In those niches, a few phylogenetically distinct microbial types, i.e., anaerobic methanotrophs (ANME), are able to grow through anaerobic oxidation of methane (AOM). Due to the relevance of methane in the global carbon cycle, ANME have drawn the attention of a broad scientific community for 4 decades. This review presents and discusses the microbiology and physiology of ANME up to the recent discoveries, revealing novel physiological types of anaerobic methane oxidizers which challenge the view of obligate syntrophy for AOM. An overview of the drivers shaping the distribution of ANME in different marine habitats, from cold seep sediments to hydrothermal vents, is given. Multivariate analyses of the abundance of ANME in various habitats identify a distribution of distinct ANME types driven by the mode of methane transport. Intriguingly, ANME have not yet been cultivated in pure culture, despite intense attempts. Further advances in understanding this microbial process are hampered by insufficient amounts of enriched cultures. This review discusses the advantages, limitations, and potential improvements for ANME laboratory-based cultivation systems.

摘要

在海洋厌氧环境中,当富含硫酸盐的海水与生物成因或热成因的甲烷相遇时,甲烷会被氧化。在这些小生境中,少数在系统发育上有明显区别的微生物类型,即厌氧甲烷氧化菌(ANME),能够通过甲烷的厌氧氧化(AOM)生长。由于甲烷在全球碳循环中的重要性,ANME 吸引了科学界 40 年来的广泛关注。这篇综述介绍和讨论了 ANME 的微生物学和生理学,直到最近的发现,揭示了新型的厌氧甲烷氧化菌的生理类型,这对 AOM 必须共生的观点提出了挑战。概述了塑造 ANME 在不同海洋生境中分布的驱动因素,从冷渗沉积物到热液喷口。对各种生境中 ANME 丰度的多元分析确定了由甲烷运输方式驱动的不同 ANME 类型的分布。有趣的是,尽管进行了大量的尝试,ANME 仍然未能在纯培养中培养。对这种微生物过程的进一步了解受到富集培养物数量不足的阻碍。本文综述了 ANME 实验室培养系统的优势、局限性和潜在改进。

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