Vallès Yvonne, Halanych Kenneth M, Boore Jeffrey L
Department of Energy (DOE), Joint Genome Institute, Lawrence Berkeley National Laboratory, Walnut Creek, California, USA.
PLoS One. 2008 Jan 23;3(1):e1488. doi: 10.1371/journal.pone.0001488.
Group II introns are ribozymes, removing themselves from their primary transcripts, as well as mobile genetic elements, transposing via an RNA intermediate, and are thought to be the ancestors of spliceosomal introns. Although common in bacteria and most eukaryotic organelles, they have never been reported in any bilaterian animal genome, organellar or nuclear. Here we report the first group II intron found in the mitochondrial genome of a bilaterian worm. This location is especially surprising, since animal mitochondrial genomes are generally distinct from those of plants, fungi, and protists by being small and compact, and so are viewed as being highly streamlined, perhaps as a result of strong selective pressures for fast replication while establishing germ plasm during early development. This intron is found in the mtDNA of an annelid worm, (an undescribed species of Nephtys), where the complete sequence revealed a 1819 bp group II intron inside the cox1 gene. We infer that this intron is the result of a recent horizontal gene transfer event from a viral or bacterial vector into the mitochondrial genome of Nephtys sp. Our findings hold implications for understanding mechanisms, constraints, and selective pressures that account for patterns of animal mitochondrial genome evolution.
II 类内含子是核酶,可从其初级转录本中自我切除,同时也是可移动遗传元件,通过 RNA 中间体进行转座,并且被认为是剪接体内含子的祖先。尽管在细菌和大多数真核细胞器中很常见,但在任何两侧对称动物的基因组(细胞器或细胞核)中都从未有过报道。在此,我们报告在一种两侧对称蠕虫的线粒体基因组中发现的首个 II 类内含子。这个位置特别令人惊讶,因为动物线粒体基因组通常与植物、真菌和原生生物的线粒体基因组不同,其特点是小而紧凑,因此被视为高度简化,这可能是由于在早期发育过程中建立种质时对快速复制的强烈选择压力所致。这个内含子存在于一种环节动物(一种未描述的海蛹属物种)的线粒体 DNA 中,其完整序列显示在 cox1 基因内有一个 1819 bp 的 II 类内含子。我们推断这个内含子是近期水平基因转移事件的结果,该事件从病毒或细菌载体转移到海蛹属物种的线粒体基因组中。我们的发现对于理解解释动物线粒体基因组进化模式的机制、限制因素和选择压力具有启示意义。