Karpeev Dmitry, Aranson Igor S, Tsimring Lev S, Kaper Hans G
Mathematics and Computer Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Nov;76(5 Pt 1):051905. doi: 10.1103/PhysRevE.76.051905. Epub 2007 Nov 6.
This paper summarizes the results of numerical simulations of the interaction of a pair of biofilaments mediated by a molecular motor. The filaments are modeled as flexible rods, and the results are applicable to microtubules, which are relatively stiff, as well as to much softer filaments, such as actin. The results provide insight into the effects of flexibility on cytoskeleton formation and the rheology of semiflexible filament networks. The simulations are based on a nonlinear elasticity equation. The results show that flexibility enhances the tendency of filaments to align. The enhancement in turn favors the formation of large-scale structures in multifilament systems. Simulations for soft filaments show that the action of the motor can result in the formation of multiple loops of the filaments as a result of buckling, which can affect the structure of a cross-linked network and thereby its rheology. The estimate for the minimal buckling length as a function of the motor speed, the viscosity of the solvent, and the bending stiffness of the filament is derived analytically.
本文总结了由分子马达介导的一对生物丝相互作用的数值模拟结果。这些丝被建模为柔性杆,其结果适用于相对较硬的微管以及诸如肌动蛋白等更柔软的丝。这些结果有助于深入了解柔韧性对细胞骨架形成和半柔性丝网络流变学的影响。模拟基于非线性弹性方程。结果表明,柔韧性增强了丝排列的趋势。这种增强反过来有利于多丝系统中大规模结构的形成。对软丝的模拟表明,马达的作用会由于屈曲导致丝形成多个环,这会影响交联网络的结构,进而影响其流变学。通过分析得出了作为马达速度、溶剂粘度和丝的弯曲刚度函数的最小屈曲长度的估计值。