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生物信号转导网络中的应急决策

Emergent decision-making in biological signal transduction networks.

作者信息

Helikar Tomás, Konvalina John, Heidel Jack, Rogers Jim A

机构信息

Department of Pathology and Microbiology, University of Nebraska Medical Center, 983135 Nebraska Medical Center, Omaha, NE 68198, USA.

出版信息

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1913-8. doi: 10.1073/pnas.0705088105. Epub 2008 Feb 4.

Abstract

The complexity of biochemical intracellular signal transduction networks has led to speculation that the high degree of interconnectivity that exists in these networks transforms them into an information processing network. To test this hypothesis directly, a large scale model was created with the logical mechanism of each node described completely to allow simulation and dynamical analysis. Exposing the network to tens of thousands of random combinations of inputs and analyzing the combined dynamics of multiple outputs revealed a robust system capable of clustering widely varying input combinations into equivalence classes of biologically relevant cellular responses. This capability was nontrivial in that the network performed sharp, nonfuzzy classifications even in the face of added noise, a hallmark of real-world decision-making.

摘要

细胞内生化信号转导网络的复杂性引发了这样一种推测

这些网络中存在的高度互连性将它们转变为一个信息处理网络。为了直接验证这一假设,创建了一个大规模模型,其中每个节点的逻辑机制都被完整描述,以进行模拟和动力学分析。将该网络暴露于数以万计的随机输入组合,并分析多个输出的组合动力学,结果显示这是一个强大的系统,能够将广泛不同的输入组合聚类为生物学相关细胞反应的等价类。这种能力并非微不足道,因为即使面对添加的噪声,该网络也能进行清晰、不模糊的分类,这是现实世界决策的一个标志。

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