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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.
Nat Methods. 2008 Mar;5(3):235-7. doi: 10.1038/nmeth.1184. Epub 2008 Feb 10.
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Multiple group-specific sequencing primers for reliable and rapid DNA sequencing.
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5
Sequence analysis of 16S rRNA genes amplified from two ribosomal RNA gene clusters of Bifidobacterium bifidum.
Antonie Van Leeuwenhoek. 1999 May;75(4):329-33. doi: 10.1023/a:1002025100444.
6
Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities.
J Microbiol Methods. 2013 Nov;95(2):149-55. doi: 10.1016/j.mimet.2013.08.007. Epub 2013 Aug 19.
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Next-generation sequencing of 16S ribosomal RNA gene amplicons.
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Development and Validation of a Reference Data Set for Assigning Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region.
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Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.
PLoS One. 2011;6(12):e27310. doi: 10.1371/journal.pone.0027310. Epub 2011 Dec 14.

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Decoding past microbial life and antibiotic resistance in İnonü Cave's archaeological soil.
PLoS One. 2025 Jul 31;20(7):e0326358. doi: 10.1371/journal.pone.0326358. eCollection 2025.
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Navigating complexities of polymorphic microbiomes in endometrial cancer.
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Two new species of the Entoloma quadratum–Murrayi complex in Japan.
PLoS One. 2025 Feb 12;20(2):e0302695. doi: 10.1371/journal.pone.0302695. eCollection 2025.
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Generating barcodes for nanopore sequencing data with PRO.
Fundam Res. 2024 Apr 25;4(4):785-794. doi: 10.1016/j.fmre.2024.04.014. eCollection 2024 Jul.
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Intermittent Fasting Improves Insulin Resistance by Modulating the Gut Microbiota and Bile Acid Metabolism in Diet-Induced Obesity.
Mol Nutr Food Res. 2024 Nov;68(22):e2400451. doi: 10.1002/mnfr.202400451. Epub 2024 Nov 9.
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TDFPS-Designer: an efficient toolkit for barcode design and selection in nanopore sequencing.
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本文引用的文献

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Pyrosequencing enumerates and contrasts soil microbial diversity.
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Microbial population structures in the deep marine biosphere.
Science. 2007 Oct 5;318(5847):97-100. doi: 10.1126/science.1146689.
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Short pyrosequencing reads suffice for accurate microbial community analysis.
Nucleic Acids Res. 2007;35(18):e120. doi: 10.1093/nar/gkm541. Epub 2007 Sep 18.
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Accuracy and quality of massively parallel DNA pyrosequencing.
Genome Biol. 2007;8(7):R143. doi: 10.1186/gb-2007-8-7-r143.
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DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations.
Nucleic Acids Res. 2007;35(13):e91. doi: 10.1093/nar/gkm435. Epub 2007 Jun 18.
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Clearcut: a fast implementation of relaxed neighbor joining.
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UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.
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Microbial diversity in the deep sea and the underexplored "rare biosphere".
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NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
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