Keten Sinan, Buehler Markus J
Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue Room 1-272, Cambridge, Massachusetts, USA.
Nano Lett. 2008 Feb;8(2):743-8. doi: 10.1021/nl0731670. Epub 2008 Feb 13.
The ultrastructure of protein materials such as spider silk, muscle tissue, or amyloid fibers consists primarily of beta-sheets structures, composed of hierarchical assemblies of H-bonds. Despite the weakness of H-bond interactions, which have intermolecular bonds 100 to 1000 times weaker than those in ceramics or metals, these materials combine exceptional strength, robustness, and resilience. We discover that the rupture strength of H-bond assemblies is governed by geometric confinement effects, suggesting that clusters of at most 3-4 H-bonds break concurrently, even under uniform shear loading of a much larger number of H-bonds. This universally valid result leads to an intrinsic strength limitation that suggests that shorter strands with less H-bonds achieve the highest shear strength at a critical length scale. The hypothesis is confirmed by direct large-scale full-atomistic MD simulation studies of beta-sheet structures in explicit solvent. Our finding explains how the intrinsic strength limitation of H-bonds can be overcome by the formation of a nanocomposite structure of H-bond clusters, thereby enabling the formation of larger and much stronger beta-sheet structures. Our results explain recent experimental proteomics data, suggesting a correlation between the shear strength and the prevalence of beta-strand lengths in biology.
诸如蜘蛛丝、肌肉组织或淀粉样纤维等蛋白质材料的超微结构主要由β-折叠结构组成,这些结构由氢键的分级组装构成。尽管氢键相互作用较弱,其分子间键比陶瓷或金属中的键弱100到1000倍,但这些材料却兼具非凡的强度、坚固性和韧性。我们发现,氢键组装体的断裂强度受几何限制效应的支配,这表明即使在大量氢键受到均匀剪切载荷的情况下,最多3 - 4个氢键的簇也会同时断裂。这一普遍有效的结果导致了一个内在强度限制,即表明在临界长度尺度下,具有较少氢键的较短链段能达到最高剪切强度。通过在显式溶剂中对β-折叠结构进行直接的大规模全原子分子动力学模拟研究,这一假设得到了证实。我们的发现解释了如何通过形成氢键簇的纳米复合结构来克服氢键的内在强度限制,从而能够形成更大且更强的β-折叠结构。我们的结果解释了最近的实验蛋白质组学数据,表明在生物学中剪切强度与β-链长度的普遍性之间存在关联。