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Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.血红素低频振动的相干光谱研究:蛋白质特异性扰动的影响。
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Investigations of vibrational coherence in the low-frequency region of ferric heme proteins.铁血红素蛋白低频区域振动相干性的研究。
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Temperature-dependent heme kinetics with nonexponential binding and barrier relaxation in the absence of protein conformational substates.在不存在蛋白质构象亚态的情况下,具有非指数结合和势垒弛豫的温度依赖性血红素动力学。
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Low frequency spectral density of ferrous heme: perturbations induced by axial ligation and protein insertion.亚铁血红素的低频光谱密度:轴向配位和蛋白质插入引起的扰动。
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Ultrafast pump-probe study of excited-state charge-transfer dynamics in umecyanin from horseradish root.辣根根中伞形花青素激发态电荷转移动力学的超快泵浦-探测研究。
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飞秒相干光谱法探测烟曲霉氯过氧化物酶的低频动力学

Low-frequency dynamics of Caldariomyces fumago chloroperoxidase probed by femtosecond coherence spectroscopy.

作者信息

Gruia Flaviu, Ionascu Dan, Kubo Minoru, Ye Xiong, Dawson John, Osborne Robert L, Sligar S G, Denisov Ilia, Das Aditi, Poulos T L, Terner James, Champion Paul M

机构信息

Department of Physics and Center for Interdisciplinary Research on Complex Systems, Northeastern University, Boston, Massachusetts 02115, USA.

出版信息

Biochemistry. 2008 May 6;47(18):5156-67. doi: 10.1021/bi7025485. Epub 2008 Apr 12.

DOI:10.1021/bi7025485
PMID:18407660
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2766418/
Abstract

Ultrafast laser spectroscopy techniques are used to measure the low-frequency vibrational coherence spectra and nitric oxide rebinding kinetics of Caldariomyces fumago chloroperoxidase (CPO). Comparisons of the CPO coherence spectra with those of other heme species are made to gauge the protein-specific nature of the low-frequency spectra. The coherence spectrum of native CPO is dominated by a mode that appears near 32-33 cm(-1) at all excitation wavelengths, with a phase that is consistent with a ground-state Raman-excited vibrational wavepacket. On the basis of a normal coordinate structural decomposition (NSD) analysis, we assign this feature to the thiolate-bound heme doming mode. Spectral resolution of the probe pulse ("detuned" detection) reveals a mode at 349 cm(-1), which has been previously assigned using Raman spectroscopy to the Fe-S stretching mode of native CPO. The ferrous species displays a larger degree of spectral inhomogeneity than the ferric species, as reflected by multiple shoulders in the optical absorption spectra. The inhomogeneities are revealed by changes in the coherence spectra at different excitation wavelengths. The appearance of a mode close to 220 cm(-1) in the coherence spectrum of reduced CPO excited at 440 nm suggests that a subpopulation of five coordinated histidine-ligated hemes is present in the ferrous state at a physiologically relevant pH. A significant increase in the amplitude of the coherence signal is observed for the resonance with the 440 nm subpopulation. Kinetics measurements reveal that nitric oxide binding to ferric and ferrous CPO can be described as a single-exponential process, with rebinding time constants of 29.4 +/- 1 and 9.3 +/- 1 ps, respectively. This is very similar to results previously reported for nitric oxide binding to horseradish peroxidase.

摘要

超快激光光谱技术用于测量烟曲霉氯过氧化物酶(CPO)的低频振动相干光谱和一氧化氮再结合动力学。将CPO的相干光谱与其他血红素物种的光谱进行比较,以评估低频光谱的蛋白质特异性性质。天然CPO的相干光谱在所有激发波长下均由一个出现在32 - 33 cm⁻¹附近的模式主导,其相位与基态拉曼激发的振动波包一致。基于正常坐标结构分解(NSD)分析,我们将此特征归因于硫醇盐结合的血红素穹顶模式。探测脉冲的光谱分辨率(“失谐”检测)揭示了一个在349 cm⁻¹处的模式,该模式先前已通过拉曼光谱法归属于天然CPO的Fe - S伸缩模式。亚铁物种比铁物种表现出更大程度的光谱不均匀性,这在光吸收光谱中的多个肩部有所体现。不同激发波长下相干光谱的变化揭示了这种不均匀性。在440 nm激发的还原CPO的相干光谱中出现接近220 cm⁻¹的模式,表明在生理相关pH下,亚铁态存在五个配位的组氨酸连接血红素的亚群。对于与440 nm亚群的共振,观察到相干信号幅度有显著增加。动力学测量表明,一氧化氮与铁和亚铁CPO的结合可以描述为单指数过程,再结合时间常数分别为29.4±1和9.3±1 ps。这与先前报道的一氧化氮与辣根过氧化物酶结合的结果非常相似。