Lee Jin-Woo, Nam Ji-Hyun, Kim Yang-Hoon, Lee Kyu-Ho, Lee Dong-Hun
Department of Microbiology, Chungbuk National University, Chungbuk, 361-763, Republic of Korea.
J Microbiol. 2008 Apr;46(2):174-82. doi: 10.1007/s12275-008-0032-3. Epub 2008 Jun 11.
Succession of bacterial communities during the first 36 h of biofilm formation in coastal water was investigated at 3 approximately 15 h intervals. Three kinds of surfaces (i.e., acryl, glass, and steel substratum) were submerged in situ at Sacheon harbor, Korea. Biofilms were harvested by scraping the surfaces, and the compositions of bacterial communities were analyzed by terminal restriction fragment length polymorphism (T-RFLP), and cloning and sequencing of 16S rRNA genes. While community structure based on T-RFLP analysis showed slight differences by substratum, dramatic changes were commonly observed for all substrata between 9 and 24 h. Identification of major populations by 16S rRNA gene sequences indicated that gamma-Proteobacteria (Pseudomonas, Acinetobacter, Alteromonas, and uncultured gamma-Proteobacteria) were predominant in the community during 0 approximately 9 h, while the ratio of alpha-Proteobacteria (Loktanella, Methylobacterium, Pelagibacter, and uncultured alpha-Proteobacteria) increased 2.6 approximately 4.8 folds during 24 approximately 36 h of the biofilm formation, emerging as the most predominant group. Previously, alpha-Proteobacteria were recognized as the pioneering organisms in marine biofilm formation. However, results of this study, which revealed the bacterial succession with finer temporal resolution, indicated some species of gamma-Proteobacteria were more important as the pioneering population. Measures to control pioneering activities of these species can be useful in prevention of marine biofilm formation.
在韩国泗川港,以大约15小时为间隔,对沿海水域生物膜形成最初36小时内细菌群落的演替进行了研究。三种表面(即丙烯酸、玻璃和钢质基质)原位浸没于泗川港。通过刮擦表面收获生物膜,并采用末端限制性片段长度多态性分析(T-RFLP)以及16S rRNA基因克隆和测序对细菌群落组成进行分析。虽然基于T-RFLP分析的群落结构因基质不同而略有差异,但在9至24小时之间,所有基质上均普遍观察到显著变化。通过16S rRNA基因序列鉴定主要种群表明,γ-变形菌纲(假单胞菌属、不动杆菌属、交替单胞菌属和未培养的γ-变形菌纲)在0至约9小时的群落中占主导地位,而α-变形菌纲(洛氏菌属、甲基杆菌属、远洋杆菌属和未培养的α-变形菌纲)在生物膜形成的24至36小时内增加了2.6至约4.8倍,成为最主要的类群。此前,α-变形菌纲被认为是海洋生物膜形成中的先锋生物。然而,本研究以更精细的时间分辨率揭示细菌演替的结果表明,某些γ-变形菌纲物种作为先锋种群更为重要。控制这些物种先锋活动的措施可能有助于预防海洋生物膜的形成。